Pleionea litopenaei: Q9312_00135
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Entry
Q9312_00135 CDS
T09336
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
plei
Pleionea litopenaei
Pathway
plei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q9312_00135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plei03019
]
Q9312_00135
Enzymes [BR:
plei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q9312_00135
Messenger RNA biogenesis [BR:
plei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q9312_00135
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
AAA_19
AAA_30
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WMS87353
UniProt:
A0AA51X6P9
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All DBs
Position
48784..50214
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AA seq
476 aa
AA seq
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MSFKSFDLLPNILENLRVSGYQHPTDIQQEVIPAALTKRDIIAVAQTGTGKTAAFSLPLL
QQLVEQREKGQTLRPNTARALVLAPTRELALQVDQSFKTYGAGLNLIIECVFGGVKINPQ
MMRLRSGCDVLVATPGRLLDLISKNAVRLEDVQTLVLDEADRMLDLGFAPEIDKLFNLLP
KKRHTLLFSATMSDTIRELGTRITVDAKHISVNPKHVTVRSVTQTMHPVDKKEKADLLIH
LFETNDWSKALIFVKTKKSANQLAKQLNLSGIPADCLHGDRSQRERQLALQKFKDDVVRV
LVATDVAARGIDIEQMPLVINFDLPKVAEDYIHRIGRTGRAGQAGLAISLVSADEVDLLK
KIETSINQLLKRELVRGFYPNHNVPETKLMSAKKKKPHKKKLAKLKLLQQESGREVKELA
ENQDELNEMENDSAQLQRFRSSSDQPMKESTGRPSINFKTAKSAKKNKSNKGKSKS
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttaaatcatttgacttacttcctaacattctagaaaaccttcgggtgtcaggt
tatcaacatcctaccgacatccaacaagaggtgattcccgcggcgttaactaagcgcgat
atcatagccgtcgcgcaaacaggcaccggaaaaacggcagccttttctttgcccttgtta
cagcagttagttgaacaaagagaaaaaggacaaacgcttcgccccaacactgctcgagct
ttagtgttggctcccacacgagagctagcgttgcaagttgatcagagtttcaaaacttat
ggtgccggtctgaatttaattattgagtgtgtttttggtggcgtgaaaatcaaccctcag
atgatgaggcttcgttcgggctgtgatgtattagtggctacccctggacgtctcctcgat
cttatctcaaaaaatgcggttcgtttggaagatgtacagactctggttcttgatgaagcg
gatagaatgctagaccttgggtttgctccagaaattgacaaattattcaatttattgcct
aaaaaacgacataccttattattttcggcaaccatgtctgacaccattcgagaactcggt
acgcgaattactgttgacgcaaagcacatttccgttaatccaaaacatgtcactgtgcgc
tcagtcactcaaacgatgcatcccgtcgataaaaaagaaaaggctgatttattaattcat
ttatttgaaacgaatgattggagcaaagctttgatcttcgttaaaacaaagaaaagtgcg
aatcaattggccaaacaattgaatctgtcgggtattcctgcagactgtcttcatggtgat
cgttcgcaacgagaacggcagctagcgctgcagaagtttaaagacgatgtggtccgtgtc
ttagtcgcgacggatgttgctgcaaggggcattgatatcgaacaaatgccattagttatc
aactttgatttaccgaaagtggcggaagattatattcaccgaattggtcgaactggacga
gcaggacaagcgggtttagcgattagcttagtaagtgcagacgaagtcgatttacttaaa
aaaatagaaacctcgatcaatcaactattgaagcgtgaattggttagaggcttctaccca
aatcacaatgttcctgaaacaaagttgatgtcggcgaagaaaaagaagccgcataaaaag
aaactcgccaaacttaagttacttcaacaagaaagtggtcgagaagtaaaagagctagcc
gaaaatcaagatgagctaaatgagatggagaacgactccgctcaattacaaagatttcgc
tcttcaagtgatcagccgatgaaggaatcgaccgggcgcccatcaatcaactttaaaacc
gcaaagtcagcgaaaaagaataagtcgaacaaaggtaaatctaagtcttag
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