Pleionea litopenaei: Q9312_02015
Help
Entry
Q9312_02015 CDS
T09336
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
plei
Pleionea litopenaei
Pathway
plei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q9312_02015 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plei03019
]
Q9312_02015 (rne)
03009 Ribosome biogenesis [BR:
plei03009
]
Q9312_02015 (rne)
Enzymes [BR:
plei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Q9312_02015 (rne)
Messenger RNA biogenesis [BR:
plei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q9312_02015 (rne)
Ribosome biogenesis [BR:
plei03009
]
Prokaryotic type
rRNA processing factors
Q9312_02015 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WMS87710
UniProt:
A0AA51RUF1
LinkDB
All DBs
Position
complement(467723..470821)
Genome browser
AA seq
1032 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIELPGREQKKSNIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIARSYFKDPSARGRINIKDAVSEGQELIVQIDKEERGQKGAALTTTIS
LAGCYVVLMPTNPRAGGISRRIEGDEREQLKDAMRSIDVPKGMGCIVRTAGVGRGAEELQ
WDLSVLLNIWDAIQKHAEARPAPFLIHQESDVLIRAVRDYLRPDVGEIIIDKQEAFDKVR
NYLQLIRPDFVNRVKLYTDREFPLFNRYQIESQIESAFQREVQLPSGGSVVIDPTEALIS
IDINSARATKGSDIEETALNTNIEAAQEIARQLRLRDIGGLIVIDFIDMSPVKNQREVER
VLNEALQSDRARVQIGRISRFGLLEMSRQRLKPSLGESSQETCPRCNGVGRIRGIESLAL
SIFRLIEEEATKESTSQVQAFLPVDVATFLLNEKRKIIAAIEKRRKVKVVLVPHPELETP
HFEILRLREEDVTEHRSFELKIESNEEEAPTSRAYTPPAAKSSSEQPAVQAIQAPTAPAP
VAKKKDSKDDKPGLLKRIFNFLFGSDDKDKKKKGGKQQNNKGRRNNQRQGNRNKRRPQNR
RNNQDRNDSRNNDSRNNDSKSNESKNNDSRNNESRGNDNRQDKRQDNKRDNNRNDNRRSR
SQRDQNKSQENRSNERSTDSKVKREPRVPRNERGNDQKVAREKNRKLAERNSEGDTQKDE
AKVLANTSKNEVATQKPEPSTQTSMTETVNTSEQPVKSESKTEQVKRNIASYDTPVSSRN
VKHDLAKEASVEVSETAPSEPSETLQPAADSNTVPSKENTETDVISDDAKVNQSDLAVDS
ANEEVTTSDVKPAETESENRTEVEHAPQESQHSEQSTIERAAGEVEINRSSTEESTASNS
HEPKASAQKDSVQEVAFEQAHVKVAESSASKSEESTSASSELESSSTADNLKEEIKAPVI
IRGHANAPMAKPESIGELQPVEFSHQSNADLTPPITREKSAADAVSSSQSPMAKASIASL
DSSQSSEPNDAQ
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttaatcaatgcgactcagcaagaagaaatgcgagttgcactggtcgat
ggtcagcgtctttacgacctcgacatcgaacttcctggacgtgaacaaaagaaatccaat
atttacaaaggccgtatcactcgaattgaaccgagtttagaggctgcgtttgtagactat
ggcgctgagcggcatggctttcttcctctaaaagaaatagctcgttcctattttaaagac
ccatctgctcgtggtcgaatcaacataaaagacgcggtaagtgaaggtcaagaattaatc
gttcaaatcgataaagaagaacgaggccaaaaaggcgctgcgctaacaacgacaatcagc
ttagccggttgctatgttgtacttatgccaacgaaccctcgagcagggggaatttctcga
cgcatcgaaggtgatgaacgggaacaattaaaagatgctatgcgatcgattgacgtgcct
aaaggtatgggttgtatcgttagaacagcgggcgttggccgtggcgctgaagaattacaa
tgggatctaagtgttctccttaatatttgggatgccattcaaaagcatgctgaagcacgc
cccgctccttttttaattcatcaagaaagtgatgtgctcattcgagcggttcgcgactat
ctacgccctgatgttggtgagatcatcatcgacaagcaagaggctttcgacaaagtacgc
aactatttacagttgatccgtcctgactttgtgaatcgagttaagttatataccgatcga
gagttccctttatttaatcgttaccaaatcgaatcgcaaattgaatcggcttttcagcga
gaagttcagcttccttctggtggctcagtcgtcattgatccgactgaagcgttaatttca
atcgatatcaactcagctcgggcaaccaagggttcagatatcgaagaaacggcgctcaac
accaatatagaagccgcccaagaaatcgcacgacaattaaggttacgtgatattggtggt
cttatcgttatcgactttatcgatatgtcacccgtaaaaaatcaacgtgaagtagagcga
gtgttaaacgaagccttgcagtctgacagagctcgagttcaaatcggtagaatttctcga
tttggtcttcttgaaatgtctcgtcaaagactaaaaccctctctcggagaatctagccaa
gaaacctgccctcgttgtaatggtgtcggacgaattcgcggtattgaatcattagctttg
tcaattttccgcttgatagaagaagaagcgaccaaagaatcaacatcacaggtccaagcg
tttctacccgttgatgtagcaaccttcttgctcaatgaaaagcgtaaaattattgccgcg
atagaaaaacgtagaaaagttaaagtggtgttagtaccacatccagaattggaaactcca
cactttgaaattttgcgcttacgcgaagaagacgttaccgagcatcgtagttttgaacta
aaaatcgaaagcaatgaagaagaagcgccaacgtctcgggcttatactccaccggcagca
aaatcaagcagtgaacaacctgcagtacaagccattcaagctcctactgcgccagctccg
gttgctaaaaagaaagacagcaaagacgataaaccaggcttactaaaacgtattttcaac
tttttatttggctctgatgataaagacaagaaaaagaaaggtggtaagcaacaaaacaat
aaaggtcgacgcaataatcaacgtcaaggcaatcgcaataaacgaagaccacaaaaccga
cgcaataaccaagatcgcaatgattctagaaacaatgattctagaaacaatgactcaaaa
agtaatgaatctaaaaacaacgattctagaaataatgagtcacgcggtaatgacaatcgt
caagataaacgccaagacaataaacgcgataataatcgaaacgacaatcgtcgttctcgt
tcgcaacgtgatcagaataaatcacaagagaatcgttcaaacgaacgttcaactgacagc
aaggtaaaacgcgaacctagagttccacgtaatgaacgtggtaatgatcaaaaggttgct
cgtgagaaaaaccgtaaattggctgaaagaaattcagagggagatacgcaaaaagacgaa
gctaaagtcttagccaatacctctaaaaatgaggttgctactcagaaaccagaaccatca
acacagacctcaatgactgaaactgtaaatacttctgagcagccagtaaaaagtgagtca
aaaactgaacaagtaaaacgcaatattgcttcgtacgacactccggtttcgtcaagaaat
gtaaaacatgatctagcgaaagaagcttctgtcgaggtcagcgaaactgctccatcagag
ccctctgaaacgcttcaaccggcggccgactccaacacagtgccttcgaaagagaataca
gaaacagacgttatctctgacgacgcaaaggtaaatcaatctgatttagcggtcgattct
gccaatgaagaagtcaccacaagtgatgttaagccagcggagactgagtcagagaatcgc
accgaagttgagcacgcgccacaagagtcacaacactctgagcaatcaaccatcgagcgc
gcggcaggcgaagtagaaataaatcgttctagtactgaagagtcgactgcttcaaactct
catgagccaaaagcttcagctcaaaaagattcagttcaagaagttgcgtttgaacaagca
catgtgaaagttgcagagtcttcggcttctaaaagcgaagagtctacctcagcttctagt
gagttagagtcatcttcaacggctgataacttaaaagaagaaattaaagcgccagtgatc
attcgtggacacgccaacgcgccaatggcaaaaccagagtcaataggtgaactgcaacca
gtagagttttctcatcaaagcaatgctgatttaacaccaccgattactcgcgaaaaatct
gctgctgatgcggtttcgagcagtcaaagtccgatggctaaagcgtcaatagcgtcgcta
gattcctctcaatcaagtgaaccaaacgacgcgcagtaa
DBGET
integrated database retrieval system
