Pleionea litopenaei: Q9312_02365
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Entry
Q9312_02365 CDS
T09336
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
plei
Pleionea litopenaei
Brite
KEGG Orthology (KO) [BR:
plei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plei03019
]
Q9312_02365 (hrpA)
Enzymes [BR:
plei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Q9312_02365 (hrpA)
Messenger RNA biogenesis [BR:
plei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Q9312_02365 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_N
DEAD
HA2_C
AAA_22
AAA_19
AAA_30
nSTAND3
AAA_25
NACHT
TsaE
Motif
Other DBs
NCBI-ProteinID:
WMS87779
UniProt:
A0AA51RUM5
LinkDB
All DBs
Position
532777..536661
Genome browser
AA seq
1294 aa
AA seq
DB search
MSLNHSVDIFSLPTRSVGKALGLARNISRLKKQQKTTTELESKLKILLETSSNNLASRRQ
KAPKVSFPDALPVSQKADEIKKLIINNQVVVLAGETGSGKTTQLPKICLDAGFGSRGLIG
HTQPRRVAATSVAARIAEEIGCELGSHVGAAVRFFDKTSPDGYIKVMTDGILLSEIQKDP
LLTQYEVIIIDEAHERSINIDFLLGLLKPLLKKRKDLRLIITSATIDLERFSQFFDSAPI
YTVEGRTFPVTIEYCPPSPDEVPHGEDPQLWQINYAVLEAIKTGPGDILIFLPGEGEIRQ
TTKRLRQLNLAQTTILPLYARLSIAEQQKVFRSIHGRKIVLATNVAETSLTVPGIRYVID
PGTARISRFSMRSKIQRLQVEKVSQASANQRAGRCGRVSAGICYRLYSEEDYLGRSEFTL
PEIKRTNLASVILQMKVMGIREPEKFPFIENADERHWRDGQTLLFELGAVDTQFDLTDIG
KKIARLPVDPKLAVMLVSGEQQALNEMLVIASLYSVRDPRERPHAKAQKADAAHAQWNDK
KSDFATFLNMWRELHQQQEDLSNREFKEYCHNNFINFVAWLDWRNTYRQLKRLMLNEGYK
VHGQSADYESVHRSLLPALLTNILTKTNEVHYQGARNTKVFIHPSSVNFKNKSAWLVSAE
LMETGKLYARATAPIEPDWIEDIAEHLAKLSYLDVHWRKKKGEACAYLQKSLFGLIYVSG
RLVGYSDVEPELSRQWLIEKGLIDGDLVCKMPFFSANQKLLDQYREEETRQRRTDIIKSE
EELVEFFNSRIPKSICNLKQLERWVKKQWKERNNLLMLSESDLLNPTADLDPLAFPQHFS
IRGSELTLEYRFEPGHKDDGVSICIPVGMLKQFTAEDFEWLVPGLLQEKILCSIKALPKA
IRKNFIPAPDYAEAIYQEMSGRFGEGSFYQMLADKLYHMSGKAIEPDAWDDVELPAHLVP
NFKVYDEAKKPIARGRDLVLLQEQLGAKIKQALARPMISEQVKKREPQHESLKEWPENFK
FSIETKQQSKQQNMTILRAFKDTGTQIEIIGAESLYQAVVTHQRGICRLILIALENKKKY
FVRSWQKRNELTKLATFFTAYSNLVDDLALAVIKNNLPSKPIESAENFQVTCEQVDEIFT
EQMNESLTLVLQLLRKTNKIRKRVYESVEPRFLQSYLDIREQLEQLWYPGCLYANGVKRL
NDYTRYLNGLDKRLERMEVNFPKEAESLRAYQAIANRVKKLPPSIHNQAYTEALDKIDWM
LQEYRVSLFAQEVKTAFPISEKRIEKQMLNLKTL
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttaaatcactcagtagatattttctctctgccgactcggtcggttggtaaagct
cttggattggctcgaaacatcagccgattaaagaaacaacaaaagacgacgactgaactt
gagagtaaacttaaaatactacttgaaacgtcctctaataatttagcttctagacgacaa
aaagcgccaaaagttagttttcctgacgcgttacctgttagtcaaaaagcagacgaaatt
aaaaaactgatcatcaataaccaagtcgttgtgttagcaggtgaaacgggtagtggtaaa
actacgcagttacctaagatttgtttagatgctggcttcggaagtcgaggtttgatcggt
cacactcaacctcgtcgagtagcagcaacctcggttgcagcgagaattgcagaagaaatc
ggttgtgaattgggtagtcatgtaggtgctgccgtacgatttttcgataagacatctccc
gatggttacatcaaagtaatgactgacggtatcctattatcagagatacagaaagatcca
ttattgactcagtacgaagttattattattgatgaagcgcacgaacgcagcatcaatatc
gatttcttactgggtttgctaaaacctttgctgaaaaaacgtaaagatttacgcttaatc
ataacgtcggcaaccatcgatttagaacgcttttctcaattttttgattcagcgccaatt
tataccgttgaaggccgtacctttccggttactattgaatattgtcccccgtcacctgat
gaagttcctcatggcgaagaccctcagttatggcagattaattatgccgttttagaagcc
attaagaccgggccaggcgatattttaattttcttacccggtgaaggtgaaataagacaa
acgactaaacgtctaagacagcttaacttagcacagactaccatcttaccgctgtacgct
cgtttaagtattgccgaacaacaaaaagtatttcgctctatccatggtcgcaaaattgta
ttggcgacaaatgttgcagagacgtctttaacggtaccgggtattcgttatgtgatcgat
ccaggtaccgcgagaattagccgctttagtatgcgcagcaaaattcaacgcttgcaggtt
gaaaaggtttctcaagctagtgccaatcagcgcgccgggcgttgtggacgtgtttcggct
ggtatctgttatcgactgtacagtgaagaagattatttagggcgttcagagtttaccttg
ccagaaattaagcgaactaatttagcttcagttattcttcaaatgaaggttatgggcatt
agagagcctgaaaaatttccttttattgaaaatgccgatgaaaggcattggcgagacggg
caaacgcttcttttcgaacttggcgcagtcgatactcaatttgatttaaccgatattggt
aagaaaatagctaggttaccagtcgacccaaaattagccgttatgttggtttccggagag
caacaagcgcttaatgaaatgctagtcattgcaagcttgtacagtgttcgtgatccaaga
gagcgtcctcatgctaaagcgcaaaaagcagacgctgcacatgcccagtggaatgataaa
aaatctgactttgcgacattcttaaatatgtggcgagagttacatcagcagcaagaagat
ttgtcgaatcgcgagtttaaagaatattgccacaataactttatcaattttgtggcctgg
ctagactggagaaacacttatcgtcaattaaagcggttgatgttaaatgaaggatacaaa
gttcatgggcaatcggctgattatgagtcagtgcatcgttccttactgccagctttgtta
accaatatattgaccaaaacaaatgaagttcactatcaaggcgcgagaaatacaaaagta
tttatccatccttcgtcggtcaattttaagaataaatcggcgtggttagtgagtgctgaa
ttgatggaaactggaaaactttatgccagagctactgcaccaattgagccagattggatc
gaagatatcgctgagcatttagcaaaacttagttatttagacgtacattggcgcaaaaag
aaaggtgaggcttgtgcttatttgcaaaagtctttattcgggttgatttatgtctctggt
cgcttagtcgggtatagcgatgtggagcctgaactaagccgccagtggcttattgaaaaa
ggtctcatcgatggtgacttggtgtgtaagatgccgtttttttcagccaatcaaaaacta
ctggatcaatatcgtgaagaagagactcgtcaaagacgcaccgacattattaaaagtgaa
gaagaactggtcgagttttttaactcgcgaatacccaagtccatttgcaacttaaaacaa
ctagagcgttgggtaaagaagcaatggaaagaaagaaataacctacttatgctctcggaa
tcagatttactaaatccaactgcagatcttgatcccttagcttttccgcagcatttttca
atacgcggaagtgaattgacacttgagtaccggtttgagccaggacataaagatgatggt
gtgtctatatgtattcctgtcggaatgctcaagcagttcacggcggaagattttgagtgg
cttgtgcctgggttattacaagagaaaattctgtgttcaattaaagcgcttccaaaagct
attcgtaaaaacttcattccagcgccagattatgccgaggctatttatcaagagatgtca
ggtcgttttggtgagggtagtttttaccaaatgttagcagacaagctttaccatatgtca
ggcaaagcaattgaacccgatgcatgggatgacgtggagcttcctgctcatttggttccg
aatttcaaggtttatgacgaggctaaaaagcccattgctcgaggtcgagatttagtgtta
ctgcaagagcagttaggagcgaagataaaacaggcattggctcgtcctatgataagcgag
caagttaaaaaaagagagccacagcatgaaagcttaaaagaatggccagagaactttaag
ttttcgatagaaaccaaacaacaaagtaagcagcaaaatatgactattttgagggctttt
aaagacactggcacacagatagaaattatcggcgcagaatccttgtatcaagcggtagtg
actcatcagcgaggaatttgtaggttgattttgatagccttagaaaataaaaagaaatat
tttgttcgctcttggcagaaacgaaacgaactgactaaactagcgacgttttttaccgct
tactctaatttagttgacgacctagccctagcggtgattaagaataatcttccaagcaaa
ccaatcgagtcagctgaaaactttcaagttacctgtgaacaggttgatgaaatctttaca
gaacaaatgaatgagtcgttaactttggtgttacagcttttacgcaagacgaacaaaatt
cgcaaaagagtctacgagtctgttgaaccgaggtttctgcagtcttacctagacatccgc
gagcagctagaacaactgtggtatcctggatgtttgtacgcgaacggggtaaaacgcctc
aatgactacacgcgttatttaaacggattagacaagcgtttagagcgaatggaggtaaac
tttcctaaagaagctgaaagtctaagagcttatcaagccattgctaatcgggttaagaag
ttaccgccttcgatacataatcaagcctatacagaggccttggataaaatagattggatg
ctgcaagaatatcgagtttcattgtttgctcaagaagtcaaaacagcgtttccaatatct
gaaaaaagaattgaaaaacaaatgcttaaccttaaaactttataa
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