Pleionea litopenaei: Q9312_06410
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Entry
Q9312_06410 CDS
T09336
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
plei
Pleionea litopenaei
Brite
KEGG Orthology (KO) [BR:
plei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plei03009
]
Q9312_06410 (rlmD)
Enzymes [BR:
plei01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
Q9312_06410 (rlmD)
Ribosome biogenesis [BR:
plei03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Q9312_06410 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
TRAM
Methyltr_RsmB-F
MTS
Methyltransf_15
PCMT
Cons_hypoth95
Methyltransf_11
RrnaAD
Methyltrans_SAM
Ubie_methyltran
Methyltransf_23
PrmA
UPF0020
FtsJ
Motif
Other DBs
NCBI-ProteinID:
WMS88545
UniProt:
A0AA51RVX4
LinkDB
All DBs
Position
complement(1444873..1446207)
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AA seq
444 aa
AA seq
DB search
MARRRKRKPIPQESITVTIESMSHEGRGIAHHQGKTIFVDSALPGEEVVMKYASVRGKFD
EGYAIEIVSPSPDRVEPPCEFFELCGGCSLQHMATDSQIKFKQGILAEHFAHFGKIEPEE
WLEPMQQDTLGYRSKARLGVRYVSKKESCLVGFREKRSSFLAEIEACEVLIPKVSQLIMS
LRAMIGSMDAKQSTPQIELAAGDEQLAFVVRHMEAMTESDRQKWIEFAMEHEIQLYFQPK
GPTTVHKVWPDDQLERLYYELPDFKVKLAFHPLDFTQVNTSINRQMVTKAIELLDPQPNE
RVLDLFCGLGNFTIPLATKAQQVIGVEGVDTMVKRGYENAKLNNLESVEFYQADLQQDFS
DKPWAKEGFDKILIDPPRSGALDVVNYLPKFGAKRIVYVSCNPATLARDAGVMKEHGYRL
VKAGVMDMFPHTAHVESMAVFERV
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggcgagacgtcgtaaaagaaaaccgataccccaagagtccatcaccgtaactatagag
tctatgtcgcatgaagggcgtggtatcgcacatcaccaagggaagacgatctttgttgat
agtgcgttaccgggtgaagaggtcgtaatgaaatacgcctctgttcgcggaaagtttgat
gaaggttatgcgattgaaatagtttctccttcgcccgatcgagtcgagcctccgtgtgag
ttttttgaactgtgtggcggatgcagtttgcaacacatggcgacagattctcaaattaag
tttaagcaaggtattttggccgagcattttgctcactttggaaaaattgaaccagaagag
tggctcgaaccaatgcagcaagatactttgggttaccgcagcaaagcgcggctgggcgta
cgctacgtgagtaaaaaggaatcgtgtttggtcggctttcgagaaaagcgcagcagtttt
ctggctgaaattgaagcctgtgaagtactcattccaaaagtcagccaattaatcatgtct
ttacgggcgatgattggttccatggatgccaaacagtctacgccgcaaattgagttggct
gcgggcgatgagcaacttgcgtttgttgttcgccacatggaagccatgaccgaaagcgat
cgtcaaaagtggatcgagtttgcaatggagcacgagattcaattgtattttcaaccaaaa
ggcccaaccacagttcataaggtttggcccgatgatcaattagaacgtctatactacgaa
ctacctgattttaaggtcaagctggcgtttcatccgctggactttacccaagtcaatacg
tccattaatcgtcagatggtcactaaggccattgagttgctagatccgcaaccgaatgag
cgagtactggatttattttgtggcctcggaaactttactattccgctggcaaccaaagct
caacaagtcattggcgttgaaggggtagataccatggttaaacgtggttacgaaaacgct
aaattaaataatttagaaagcgttgagttctatcaagccgatcttcaacaagattttagc
gataagccttgggcaaaagaaggctttgataaaatactgatcgatccaccgcgcagtggc
gctttagatgttgtgaattatttgccaaaatttggagcaaaacgcattgtttatgtgtca
tgtaaccctgcgacccttgctcgagatgcaggtgtgatgaaagagcacggctatcgttta
gttaaagccggtgttatggatatgtttccacacactgctcatgttgaatctatggcagtt
tttgagcgcgtttaa
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