Pleionea litopenaei: Q9312_07710
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Entry
Q9312_07710 CDS
T09336
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plei
Pleionea litopenaei
Pathway
plei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q9312_07710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plei03019
]
Q9312_07710
03009 Ribosome biogenesis [BR:
plei03009
]
Q9312_07710
Enzymes [BR:
plei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q9312_07710
Messenger RNA biogenesis [BR:
plei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q9312_07710
Ribosome biogenesis [BR:
plei03009
]
Prokaryotic type
rRNA helicases
Q9312_07710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
Fe-ADH
adh_short
DsrH
Motif
Other DBs
NCBI-ProteinID:
WMS88794
UniProt:
A0AA51X8C5
LinkDB
All DBs
Position
complement(1715898..1717775)
Genome browser
AA seq
625 aa
AA seq
DB search
MSENTTVSFEQLSLPDSILQALKVIGYEKPSPIQEACIPLIQQDIDLIGQAQTGTGKTAA
FALPSLAKVDVSVNKPQVCVICPTRELAIQVAEAFGEYAKFIKGFRVLPIYGGQPYPPQL
RQLDKGVHVVVGTPGRIMDHMRRGSLKWDHLKTLVLDEADEMLRMGFIDDVEWILEHTPE
QRQIALFSATMPKPIKKVAEKFLNEPQHVQIESKAKTASTIEQLFVSVSNNYKLEALTRI
LESENSDATIIFMRTKSSCDELAKKLTARGFSAEAIHGDMQQKQREQMVQQLKDNKIDII
IATDVAARGLDVERISHVINYDIPHDSESYVHRIGRTGRAGREGKAILFVAPRERHLLRM
IERNNSTTIARMSLPSVEVINDERTRRFLDDVQQQIIAGEHEAFRHIIERIQSEHNQSGV
DIASALASLLFKDKPLLLENLPEIPDFEDSKGGRSNSNKPSGRGKAPVRTQAEPLKGDPD
VELQRYVIHVGRDHGVSPKHIVGAIANEAEMESRYIGNIKLFDDVSTVDLPSGMPPEVMR
ILQRARVCGQSLNIELASEYLKGDSDGGKPGRKHKGGKSKPRQGKPSHKKGGGKRSGNDK
RSGEKRAHDKPKDGKGSDKRKKKSS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaataccacggtgagctttgagcagctctcactgcccgattctattttacaa
gcgctcaaagtgattggttacgaaaaaccttcacccattcaagaggcctgtattcctctt
attcagcaagatattgacttaattggtcaagcgcaaaccggtaccggtaaaaccgccgct
tttgcgttaccttcgctagcgaaagttgatgtatctgttaataaaccgcaagtttgtgtt
atttgcccaacgcgtgagttggcgattcaagtagccgaagcgttcggtgaatacgcgaaa
tttattaaaggatttagagtacttcctatttacggcggtcagccttacccaccacagttg
cgtcaattagacaaaggcgtgcatgtggttgttggtacgcctggtcgtattatggatcat
atgcgtcgtggctcacttaaatgggatcatttaaaaaccctagtgctcgacgaagcggat
gaaatgttacgcatgggattcatcgacgatgtcgaatggatcttagagcacacgcctgaa
caacgtcagattgctttgttttctgcgacgatgccaaaaccgatcaagaaggttgctgag
aaatttttaaatgaaccacaacatgttcaaattgaaagcaaagcaaaaacggccagtacc
attgagcagttgtttgtatcggttagcaataactataaacttgaagcgcttactcgaatt
ttagaaagtgaaaattcagacgcgaccattatttttatgcgtacaaaaagcagctgcgat
gagttagccaaaaaactaaccgcacgaggcttttctgccgaagccattcatggcgacatg
cagcagaaacaacgtgaacaaatggttcagcagttaaaagataataagattgatattatt
atcgcgaccgatgttgccgctcgtggattagacgtagagcgaatttcgcatgttattaac
tacgatattccacacgactcagaatcatatgtgcatcgaattggtcgtaccggacgcgct
ggccgcgaaggtaaagcgattctttttgttgcccctcgtgagcgtcatttattgcgcatg
attgagcgcaataactcaaccacgattgcgcgcatgtcattgccgtcggttgaagtgatc
aatgatgagagaacacgtcgctttttagatgatgttcagcaacaaattattgccggtgaa
cacgaagcttttcgtcacatcatcgaacgcattcaaagcgaacataatcagtcgggtgtt
gatattgcatcggcactggccagcttattattcaaagacaagcctttgttgttagaaaac
ttacctgagattcctgattttgaagattcaaaaggtggtcggtcgaacagtaataagcca
agcggacgaggtaaagcgccggttcgtacgcaagccgaaccattaaagggcgatccagat
gttgaattgcagcgctatgtaattcacgtagggcgtgaccacggtgtatctccgaagcac
attgttggcgccattgcgaacgaagccgaaatggaaagccgatacattggcaacattaag
ttgtttgacgatgtatcaaccgttgatcttccgtcaggtatgcctccagaagtgatgcga
attttgcagcgcgcaagagtgtgcggtcagtcgttgaatatcgaattagccagtgaatat
ttaaaaggcgattctgacggcggcaaacctggtcgaaagcataaaggtggaaagagcaaa
cctcgtcaaggtaaaccttcacacaagaagggcggtggcaagcgctctggcaacgataag
cgaagcggcgaaaagcgagctcacgataagccgaaagacggtaagggcagcgataagcgc
aagaaaaagtccagctaa
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