Pleionea litopenaei: Q9312_10245
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Entry
Q9312_10245 CDS
T09336
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
plei
Pleionea litopenaei
Pathway
plei02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
plei00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Q9312_10245 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plei03021
]
Q9312_10245 (rpoD)
Transcription machinery [BR:
plei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Q9312_10245 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
IPP-2
Motif
Other DBs
NCBI-ProteinID:
WMS85593
UniProt:
A0AA51RQ67
LinkDB
All DBs
Position
2265031..2266875
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AA seq
614 aa
AA seq
DB search
MSNEMSSQSQKSQLKLLIARGKEQGFLTYAEVNDHLPPDIVDPDQVEDIIRMINDMGIQV
FESAPDADALLMADSVADEEAAEEAAAALASVDSDFGRTTDPVRMYMREMGTVELLTREG
EIDIAKRIEEGIREVAVAIAEYPATVETLLDDYDRFLAGEIKLSDIITGFSDGTEDDDII
IGGTHVGSEVPEDEQDDDDDDDDDSADEDLGPDPEEAAEKFAALRKQHEKTVNAIKKYGR
AHKSAQKQVSELQEQFMQFKLLPKEFDRLTSKMRNKMDALRTQERLIMKLVVDQGKMPRK
TFISEFPGNETNTKWLNSHLSKDVAYHDALEMIAEDVIRCQNKLLHIEEDTNLSIAEFKE
TNRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPQP
EELAVRMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTQESPVDSATATSL
GEATKDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEKLRSFLDEQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgagatgtccagccagtcacaaaagtcccaacttaaactattaatcgcgcgc
ggtaaagagcagggcttcttgacctatgccgaagtgaatgaccacttgccgcccgacatt
gtcgatccggatcaagtcgaagacatcattcgcatgatcaacgatatgggtattcaggtc
tttgaatctgccccagatgccgacgccttgttaatggcagactcagttgccgatgaagaa
gcagccgaagaagcagccgctgcgctagccagtgtcgactctgactttggccgcaccacc
gacccagtgcgtatgtacatgcgtgaaatgggtaccgtagagctgttaactcgcgaaggt
gagattgacattgcgaaacgaattgaagaaggcattcgagaagttgccgtcgcaatagcc
gaataccctgcgaccgtcgagacgttacttgacgactacgatcgcttcttagcgggtgaa
attaaattatcagacatcatcactggttttagtgatggcaccgaagatgacgacatcatt
atcggtggaactcacgttggctcagaagtccctgaagatgagcaagacgacgacgatgat
gatgatgatgacagcgccgatgaagatttaggaccggatcctgaagaagcagctgagaaa
ttcgctgccttgcgcaagcaacatgaaaagaccgttaatgcgattaaaaagtacggtcga
gctcataagtccgctcagaaacaagtaagcgagctgcaagagcaattcatgcaatttaag
ttgcttccaaaagaattcgatcgcttaacgtctaagatgcgtaacaagatggatgctctt
cgcactcaagagcgtttaatcatgaagctcgtcgtcgatcaaggcaagatgccacgcaaa
accttcatttcagaatttcctggcaatgaaaccaataccaagtggttgaactcacatctt
agcaaagacgtcgcttatcacgacgccctagaaatgattgcggaagatgttattcgttgc
caaaacaaattattacacatcgaagaagataccaacctttcaattgctgagtttaaagaa
accaaccgccgcatgagcattggtgaagccaaagctcgtcgtgcgaaaaaagaaatggtt
gaagcaaacttacgattggtaatttcgattgccaaaaaatacaccaatcgcggcctacaa
ttcctcgacttaattcaagaaggtaacattggcttgatgaaagcggttgataaattcgaa
tatcgacgcggctacaaattctcgacttatgcaacttggtggatccgtcaagcgattacg
cgctcgattgccgaccaagctcgcaccattcgtattccagttcatatgatcgaaaccatc
aataaactgaatcgaatttcgcgtcaaatgctacaagaaatgggacgtgagccacagccc
gaagaattggctgttcgcatggaaatgcccgaagataaaattcgtaaagtgctgaaaatt
gcaaaagagccaatctccatggaaacaccgattggtgatgatgaagattcgcatttaggt
gacttcattgaagactcaactcaagagtctccagtagattcggcaacggctaccagtttg
ggagaagcgaccaaggatgttcttgcaggattaaccgcaagagaagcaaaagttttacgt
atgcgcttcggaattgatatgaataccgaccacacgcttgaagaagtgggtaagcagttc
gatgtaactcgtgagcgaattcgacaaattgaagcgaaagctttacgtaaacttcgtcat
ccatctcgctctgaaaaattacgcagctttcttgacgagcagtaa
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