Paenibacillus lentus: EIM92_04460
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Entry
EIM92_04460 CDS
T05914
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plen
Paenibacillus lentus
Pathway
plen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EIM92_04460 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plen03400
]
EIM92_04460 (mfd)
Enzymes [BR:
plen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EIM92_04460 (mfd)
DNA repair and recombination proteins [BR:
plen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EIM92_04460 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
AAA_16
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AZK45540
UniProt:
A0A3S8RRG7
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All DBs
Position
complement(972962..976486)
Genome browser
AA seq
1174 aa
AA seq
DB search
MLQALIQAFSKDTDFATAIAGVNSGMKEQLISGLSGSSKQIMLAAMHKETNRPLLVVTHN
MFAAQKIAEDLQEALSSDEVLLYPANELVAAESAVSSPETLAQRIEVLLKCSQGFRGIVV
VPYSGIRRFIPSPETMAAARLDIALGGTLQLDHFLSKMVELGYERVERVELRGEMSIRGG
IIDFYPLTAELAYRIELFDDEVDSIRTFDPADQRSIEQVKHVSVPPCKELIASKDRFTKA
AQAVSERLEQQLEKMTDRQVKQRLKEEISREIELLREQVYFPEIYKYISLIYPENKTLYD
FMADDTLLILDEPARLLETAKQLERDEAEWHLHLFQNGKSLPDLPLAMDGDRVLYRRPFQ
TMFLSLFLKQVPHVQPQNIINFVSRTMQDFHGQMNVLKAEMERWKKSGANVIMLANGEER
IERMRRVLLDYGIDEPTLLQGNLQSGFELPSVHLVVITEGEMFSKKQRKARKVTKNMDNA
ERIKSYTELKVGDYVVHQNHGIGKYLGIGTLEVGGIHKDYMHIMYAGGDKLSVPIEQIDL
IQKYVGSEDKEPKVYKLGGNEWTRVKNKVRTTVQDIADDLIKLYAERQASPGYGFEKDTP
EQQEFEAMFPYEETRDQIRAIEEIKKDMEQPRPMDRLLCGDVGYGKTEVAIRAAFKSAIE
GKQVAVLVPTTILAQQHYETFRERFAGYPINIQSLSRFRSRKEQNETIKGIRQGTVDIVI
GTHRLLSQDVVFKDLGLLIVDEEQRFGVTHKEKLKRLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQSLVREAIERELARGGQIYYLYNRVQGIQEMAAQ
ISMLVPEARVGVGHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKSLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKISVLGEEAPEDKSWNTTIDLG
IDAYLPSDYIYDSIQKIEIYKKTASAASFEDVAELEDELLDRFGELPEAVENLLSVARVK
LYGKLYGMESMTRRGDEVVIKFLDGREKDVNPAKLVEVGNLFGRRVQFNQGTAMLIRIKT
KELDDKALMGLLEQFLEALKVSFKLKGELQDVSK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttgctacaagcacttatacaagctttttctaaagacacggattttgcgactgccatagca
ggcgtgaattcgggaatgaaagaacaattgatttccggcttatccggatcatctaaacaa
attatgctggctgcaatgcacaaagaaacaaatcgcccactgcttgtcgtgacacataat
atgtttgcagcccagaaaattgcagaagatttacaggaagcgctgtcgtccgatgaagtg
ctcctgtatccagctaatgagctcgtagcggcggaatcagcggtatcgagccctgagacg
ctggcgcagcgaattgaggtactactgaaatgctcccaaggattccgggggattgtggtg
gtgccttattctggcattcgcagatttattccatcgccagaaacgatggctgccgcacgc
ttggacatagctcttggcggtacgctgcagttggatcatttcttaagcaaaatggtcgag
ctcggctacgagcgggtggaacgcgtggaactgcggggcgagatgagcattcgcggggga
attatcgatttctacccgttgactgcggaacttgcctaccgaatcgagctgttcgacgat
gaagtggactcgattcgtacgtttgatccagccgatcaacgctctatagagcaggtgaag
cacgtatctgtgcctccatgcaaggagcttatcgcttccaaagaccgttttaccaaggca
gcccaagctgtatcagagcggctggagcagcagttggagaaaatgacggatcgtcaagtc
aaacaaagattgaaagaggaaatttccagagaaatcgaactgctccgtgagcaggtttat
tttcctgagatttataagtatatttcactgatatatccggagaataaaacgctgtatgat
tttatggctgatgatacgctgctgattctggatgaacctgcccggctgctggaaaccgct
aagcagttagagcgggatgaagcggagtggcacttgcatctgttccagaatggcaagagt
ttgcctgatttgccgcttgccatggatggggatcgggttctttatcgtcgtcctttccag
accatgttcctgtcgctatttttgaagcaggtgcctcatgttcagccccagaacattatt
aacttcgtcagccgaaccatgcaggacttccacggtcaaatgaatgtacttaaggcagaa
atggaacggtggaagaagagcggtgcgaatgtgatcatgctggcgaacggcgaagagcgc
atagaacggatgcgccgggtgctgcttgattatggcattgatgagccgaccttactgcaa
ggcaatttgcagtctggatttgaactgccctcggtgcatctggttgtcatcacggaagga
gaaatgttctccaagaagcagcgtaaagcacgcaaagtaacgaaaaacatggataatgct
gagcggataaaaagttataccgagcttaaagtgggcgattatgtcgttcaccagaatcac
gggattggtaaatacctcggcattggcacattggaagttggcggcatacacaaggactac
atgcatattatgtatgcgggcggggacaaactttccgtacccatcgagcaaattgatctg
atccagaaatatgtgggctccgaggataaagaacccaaagtatataagctgggtgggaac
gaatggacgagggtcaagaacaaggttcgcactacggtacaggatatcgccgacgatctc
atcaagctgtatgctgaacgtcaagcttcgccgggctatggctttgagaaggatacgccc
gaacagcaggaatttgaagccatgttcccttatgaggagacgcgcgatcagattagggct
attgaggaaattaagaaggatatggagcagccgcgtcctatggatcgattgctatgcggt
gatgttggctatggaaagacagaggtggcaatccgagctgccttcaagagtgcaattgaa
gggaaacaggttgcggtgcttgtgccgacgacgattttggcgcagcagcattatgagacc
ttccgcgagcgatttgcgggttatccgatcaatattcagtcattaagccgcttccgcagc
cgcaaagagcagaatgagacgatcaaaggtatccggcaagggacagtagatattgttatc
gggacgcatcgccttttatcccaggatgtcgtcttcaaagacttagggttattaattgtc
gatgaagagcaacgtttcggcgtaactcataaggagaagctcaagaggctgaagacgaat
gtagacgttctaactttaacggcgacgccaattccaagaaccctgcacatgtctatgctc
ggcgttcgggatttgtcagtcatcgagacgcctccagagaatcgcttccctgttcaaacc
tatgtcgtcgagcacagtcaatctctggttcgtgaagcaattgaacgggaactggcgcgg
ggcgggcaaatttattacctatacaaccgagtccagggtatccaggagatggcagcacaa
atatcaatgcttgttccagaagctagagtcggagtgggccacggtcaaatgtcggagcag
gagctagagaagacgattctcgacttccttgacggcgaatatgacgtcctggtcagcacg
agcatcattgagaccggggtggatatcccgaacgtaaatacgcttatcgtacatgatgcg
gataaaatgggactgtctcagctatatcaattgcgtgggcgagttggccgttcgaaccgg
attgcctatgcttattttacctatcagcgagataagtctttgacggaggtcgccgagaag
cgccttcaatccattaaggaatttacggaactaggttctggatttaaaatcgcaatgaga
gatttgtccattcggggtgcaggtaacttactcggtgcggagcagcacgggtttattgcg
tctgtcggatttgatctttattctcagatgttggctgaagaaattcagaagcgaaagata
tcggtacttggcgaagaagcgcctgaggataaatcctggaatacgacgatcgatctcggc
atcgatgcttatttaccgtccgattatatttatgatagtattcaaaagatagagatttac
aaaaaaacagcttcggcagcatccttcgaggatgtcgcggagctggaggacgagcttctt
gatcgattcggcgagctgccggaagctgtagaaaacttactgtccgtcgctcgagtgaag
ctttatggcaaactttacgggatggaatccatgacgcggcggggggacgaggtagtgatt
aagttcctcgatggccgtgagaaggacgtcaatccggccaaacttgtggaagttggcaat
ctgttcggaaggcgtgtacaatttaatcagggtacggcaatgctgatccgaattaaaacc
aaggaattggacgataaagcattgatgggtttgttggagcaattccttgaggccctgaag
gtttcgttcaaattgaaaggggaactacaagatgtctcgaagtaa
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