Paenibacillus lentus: EIM92_11940
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Entry
EIM92_11940 CDS
T05914
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
plen
Paenibacillus lentus
Pathway
plen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EIM92_11940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plen03019
]
EIM92_11940
Messenger RNA biogenesis [BR:
plen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EIM92_11940
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Polo_box_4
Motif
Other DBs
NCBI-ProteinID:
AZK46772
UniProt:
A0A3Q8S4U6
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Position
2691861..2693585
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AA seq
574 aa
AA seq
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MNEEASKTAKTTKTAKTQRRPKSSPPPVRIFALGGLGEIGKNMYVVEYRNELIIIDAGLK
FPDSRLSGIDYIIPDMSYLVANKHKIKGLFITHGHEDHIGAIPFLLRQLQIPIYGGPLTI
GLVRAKLEEYRLLGQAELHVFHEDDRYVFQHLSVHFFRTTHSIPDAFGIVVDTPYGPVVH
TGDFKFDFTPEDKPADLSKMASVGGEGVLALLADSTNSEREGFTPSERKVGNAILESFKQ
CEGRILFATFASNVHRLQQVVEAAMQCDRKIAVIGRSMEKVFTIGQELGYIRVPDGMLID
VKHIDRYEDNRVLIVCTGSQGEPNAALSRIASGAHRSVQIYPGDSVIFSSSPIPGNEQNI
NRSIDMLMRAGAHVIYGSIIDIHTSGHGNREDLKLMLSIIRPKYFIPIHGEYRMLLAHRS
LAMQTGISEDRIFVMNVGDTLSVYRNRAKKGRSVSSGEVFISNGEMRTYEDELVEERGEL
AREGIVIVVMTIDAETGQILAGPDIVTRGFVYMQDARPLLRRAETTLKRNLSRQGERQEY
NRSDWVRSTHRIMRRFFMKEVGRAPHIMPSILEV
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagaagctagcaaaactgcgaagactacgaagaccgcgaagacacagcgccgc
cctaaatcgtcccccccgccggttcgaatttttgcgttgggcggtctaggagaaatcggt
aaaaatatgtacgttgtggagtacagaaatgaactcatcatcattgatgcaggcttgaaa
ttccccgattcgcgcctatccggaattgattatattattcccgatatgagttatctagtt
gccaacaagcataaaatcaaaggattgtttattacgcatggacatgaggatcatattggg
gccattcccttcttgctccgtcagctgcaaattccgatttatgggggaccgctgaccatc
ggtcttgtccgtgctaaattggaggaataccgcctgctcggacaagccgagctgcatgta
tttcatgaagacgatcggtatgttttccagcatctttccgtccattttttcaggacaacc
catagtattcctgacgcatttgggatcgttgtcgatacgccatacggcccggtcgtacat
accggggatttcaagtttgactttacgccggaggataagccggccgacctgtccaaaatg
gccagcgtcgggggcgagggtgttcttgcgcttctggcggatagcacaaacagcgaacgg
gagggcttcaccccttccgagcgcaaggttgggaacgcgattcttgaatcgttcaagcag
tgcgagggccgcatcttgttcgcgacctttgcatccaacgtacaccgcctgcagcaggtg
gtggaggctgcaatgcaatgcgaccgcaaaatcgctgttatcggacggagcatggagaag
gtatttacgattggtcaggaactcggatatatccgcgtgcctgatggcatgctcattgat
gtgaagcatattgaccgttatgaggacaatcgggtgctgatcgtttgtacgggaagccaa
ggagagccaaatgcagcgctgagccggatcgcttccggggcgcatcgctctgtacaaatt
taccctggggattcggttatattctcctcctctcccattccagggaacgagcaaaacatt
aatcgaagcattgatatgctgatgagagcaggggctcatgttatatacggttccatcatt
gatatccatacctcgggtcacggaaatcgggaggatctgaagctcatgctaagcattatc
cgtccgaaatacttcattccgattcacggggaatatcgtatgctgctcgcccaccgcagt
ctggcgatgcagacggggatatcggaagaccgcatctttgtcatgaacgtcggagataca
ttgtctgtatatcgcaaccgtgccaagaaaggccgttcggtttcatccggagaagtcttc
atcagcaatggcgagatgagaacctacgaggacgagctcgtggaagagcggggcgaattg
gcgagagagggcatcgttatcgtcgtcatgacgattgacgctgagaccgggcaaattctt
gctggtccggatatcgtgacccgcggcttcgtttatatgcaggacgcgcgcccgctgctg
cggcgagcagaaacgacgctgaagcgcaacctatccagacagggagagcgccaggagtat
aatcgttcggattgggtgcggtcgacgcaccggatcatgcgcagattttttatgaaagaa
gtaggccgagcgcctcatattatgccatcaatattagaggtttag
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