Paenibacillus lentus: EIM92_17545
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Entry
EIM92_17545 CDS
T05914
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
plen
Paenibacillus lentus
Pathway
plen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EIM92_17545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plen03019
]
EIM92_17545
Messenger RNA biogenesis [BR:
plen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EIM92_17545
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GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AZK47737
UniProt:
A0A3S8RXV2
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Position
complement(3899418..3901097)
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AA seq
559 aa
AA seq
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MSKKMNNDKLTIFALGGVAEIGKNMYVVQYANDIVVIDAGLKFPEEDMLGIDIVIPDITY
LTENRDKVRGIVLTHGHEDHIGGLPYVLKNLNVPVYGTKLTLGLVENKLKEAGLLGDTKR
VLIHADSEIQLGSTLKATFFKTNHSIPDSVGVCIETPEGNVVHTGDFKFDHTPVNDQFAD
LHRMGEIGKKGVLALLSDSTNAEKPGFTPSEKNVGIVLDDIFRKAQQRVVVATFASNVHR
IQQVIDATYSTDRKLTIIGRSMVNVVTIAAELGYLNVPDGILIDPDEVNKMAADRVVILC
TGSQGEPMSALTRMARSTHRKVDILPGDTVIIAATPVPGNEKYVGRTIDELFRLGAEVIY
SGSNSGVHVSGHGSQEELKLMLNLMRPKYFIPVHGEYRMLRKHALLGESVGIDPDNIFLL
DIGEMVEIQNGAARKAGKVPAGNVLIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTLSKQ
DGTIVSGPDIISRGFVYVRESEGLLEEANRIVSSTLEKLMSENVNEWASLKTNVKDSLGR
FLYEQTRRRPMILPIIMEV
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaaaaaaatgaataatgataaattgacgatctttgcattgggcggcgtagcggaa
atcggaaagaacatgtacgtcgttcaatatgccaatgacatcgttgtaattgatgctggc
cttaaatttccagaagaggacatgcttggcattgatatcgtcattcccgatatcacttac
ttgacagagaatcgtgacaaagtaaggggcatcgtgcttacgcacggccacgaagaccat
atcggtggattgccatatgtactcaaaaacttaaatgttcctgtctacggaacgaaattg
acgctggggctggttgagaacaaattaaaggaagccggtttgcttggggatacgaagcgt
gtactcattcatgcggattcggagattcagttaggctcgacgctaaaagcgacattcttt
aaaacaaaccacagtattcctgattcggttggggtgtgcatcgaaacgccggaaggaaac
gtagttcatacgggtgacttcaaatttgaccatactccagttaatgatcagtttgctgat
ttgcaccggatgggggaaatcgggaagaaaggggtactggcgctattatcggatagtacg
aatgccgagaagcctgggttcacaccatcagagaaaaatgttggaatcgtattggatgat
attttccggaaggctcagcagcgcgttgttgttgctacattcgcctccaatgtacaccga
attcaacaagtgatcgatgcaacctactcgacagatcgcaaactcacgattattggtcgc
agtatggttaacgtcgtgacgattgctgcagaacttggctacttgaacgttccggatggt
atcttaatcgatccggacgaagtgaacaaaatggcggcggatcgtgttgtcatactctgc
acaggcagtcaaggcgagccgatgtcagccttaactcgtatggctcggtcaactcaccgt
aaggtggatattctgcctggagatacagtcatcatcgcggcgacgccagtgcctggtaac
gaaaaatacgtaggacgcacgattgatgaattattccgtctcggcgccgaggtaatttat
agcggttctaattcaggagttcacgtctccgggcatggcagccaggaagaattgaaattg
atgttgaatttgatgcgtcctaaatatttcatccctgttcacggggagtatcgaatgctg
cggaagcatgctctactcggtgaatccgtcggaattgatccggataacatcttcttgctt
gacatcggcgaaatggtagaaattcagaatggcgcagctcgcaaagcgggtaaagtacca
gctggcaatgtgctaattgacgggcttggagtcggtgacgttgggaatatcgtgcttcgt
gaccgtaagctgttgtctcaagatggcattcttgttgtcgttgtcacgctgagcaaacaa
gatggaacaatcgtttctggaccagacattatatccagaggcttcgtatacgttagagag
tcggaaggccttcttgaagaagcaaatcgaattgtatccagcacattggagaagttaatg
agcgaaaatgtgaatgaatgggcttcgctgaagacgaacgtgaaggattcgttaggacgt
ttcctttacgaacaaacacggcgcagaccgatgattcttcccatcattatggaagtgtga
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