Paenibacillus lentus: EIM92_19090
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Entry
EIM92_19090 CDS
T05914
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plen
Paenibacillus lentus
Pathway
plen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EIM92_19090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plen03019
]
EIM92_19090
03009 Ribosome biogenesis [BR:
plen03009
]
EIM92_19090
Enzymes [BR:
plen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EIM92_19090
Messenger RNA biogenesis [BR:
plen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EIM92_19090
Ribosome biogenesis [BR:
plen03009
]
Prokaryotic type
rRNA helicases
EIM92_19090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Helicase_RecD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AZK48012
UniProt:
A0A3Q8S656
LinkDB
All DBs
Position
complement(4218624..4220201)
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AA seq
525 aa
AA seq
DB search
MSTFADFGLEPKVLQAITELGFEEATPIQTKSIPIAMSGRDLIGQAQTGTGKTAAFGLPL
ISKIPANEDRIVALVMAPTRELAIQVAEEIGKLSRFKGIRSLPIYGGQDIVRQIRALKKK
PQIIIGTPGRLLDHINRKTIKLDDVQTVVLDEADEMLDMGFMEDIQSILKLVPEERQTML
FSATMPANIQKLAQQFLKEPEHVSVIPKQVSAPLIDQAYIEVHERQKFDALTRLLDMESP
ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGVAWSFVTPREIDHLRFIERITR
QKITRKPLPSIAEAIEGKQRITAERILELVEAGELNEYKGIAITLLEQYDSVNLLAAAFK
LITGDKADKANIELTPEEPIRVKRRNPDIRSSGRKPYGYGNRSGGGYRRDNRDGGGRGGY
GSKGGYNRDGGRDSYRSSSDRKPRPASNSGERRAPRRSDNPSFDN
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
ttgagtacatttgcagatttcggcctagagcctaaagttctacaagcaataacagaactc
ggattcgaagaagcaacgccgatccagaccaaatcaatacctattgcgatgtcaggccgc
gacctgatcggacaagcacagacagggacagggaagacagcagcattcggccttccacta
atcagtaaaattccagccaatgaagatcgtatcgttgctctcgttatggccccgacccgg
gagcttgccatccaggtggctgaggaaattgggaagttgtcccgcttcaaaggaatccgt
tccctgccgatttatggcgggcaggacattgtaagacaaattcgcgcattaaagaagaaa
cctcagatcattatcggtacccctggccgcttattggatcacattaaccgtaagacgatt
aagcttgatgatgtacagactgttgtactagatgaagccgatgaaatgctcgacatgggc
tttatggaggatattcagtcgattctgaagcttgtccccgaagagcgccaaacaatgcta
ttttccgctacaatgccagcaaatatccaaaagctcgcacagcaatttcttaaagagccg
gagcatgtttctgttattcctaagcaagttagcgcaccactgatcgatcaggcttatatc
gaagtacatgagcgtcagaagttcgatgcgcttacccgtttgttggatatggaatcccca
gagcttgccatcgtattcggacggacgaaacgccgtgtagatgagcttgccgaagcattg
caaaaacgtgggtattcggcagatggcctgcatggcgatctatcccagaaccagcgcgat
aatgtaatgcgcaagttccgggatggcagtattgatgtgcttgttgctaccgacgtagca
gctcgtggcctggatgtgtctggcgtaactcacgttgttaacttcgatctgccgcaggat
ccggagagttatgtacaccgaatcggccgtacgggtcgcgcgggtaaagagggtgtagcc
tggtcgttcgttacaccgcgggaaattgatcatcttcgtttcattgagcggattacccgc
cagaagatcacacgtaaaccactgccatcgattgccgaggcaattgaagggaaacagcgc
attacagcagagcgtattttggaactcgttgaagctggtgaactgaatgaatataaagga
atcgccattacgcttctggagcaatatgattccgttaatttgctggcggccgcatttaag
ctcattaccggcgataaagcggataaagcaaacattgaattgactccagaagagccgatt
cgtgtaaaacgccgcaatccggacatacgttctagcggacgcaaaccgtatggttatggc
aatcgcagtggcggtggataccgtcgagacaatcgcgatggcggcggccgcggcggatac
ggcagcaagggcggttataatcgtgacggcggacgggattcttaccgctcctcatcggat
cgtaagccgcgtccagcaagcaacagtggagaacgcagagctcctagacgcagcgacaat
ccttcgttcgacaattga
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