Paenibacillus lentus: EIM92_23110
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Entry
EIM92_23110 CDS
T05914
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
plen
Paenibacillus lentus
Brite
KEGG Orthology (KO) [BR:
plen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plen03009
]
EIM92_23110 (rlmD)
Enzymes [BR:
plen01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EIM92_23110 (rlmD)
Ribosome biogenesis [BR:
plen03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EIM92_23110 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_15
Methyltransf_25
MTS
PrmA
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltransf_11
UPF0020
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
AZK48715
UniProt:
A0A3S8S0P9
LinkDB
All DBs
Position
complement(5183201..5185000)
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AA seq
599 aa
AA seq
DB search
MKKQRNKGTVGRKESAGRAHGSAERETGIRSSSKRSKNRSTGNLRGARKQQAREIAGLPV
SKNDEVVIDIIGMNHDGEGVGRADGYTLFVAGALPGEKALVKVLKTKKQYGYAKLLELRE
VSPDRVAAPCSIYDKCGGCQLQHLSYAGQLAWKRQHVIDALERIGKLRVAETGDAGAVLG
GDGASEGAGAGTGTGAVVSEAVRGGNGVSGDRAAEVSAGTGVVKVAANDSSGVTTVGFGG
YELEGEGLVAAVEPSAHNGIVVLPTLGMAEPWRYRNKAQVPVGVTDGALVGGFYARGSHR
IVDMETCLIQHESTDDVVARVKAIGRKLGITAYNEESGQGLLRHVVVKVGFRTGEVMLVL
VTNGQDIPHVEAWIGLIREQLPQVVSICQNINTKQTNVIFGDETRVLWGRDVIYDYIGDV
QFAISARSFYQVNPVQTEVLYSKTVEYAGLTGRETVIDAYCGIGTISLFLAQHAERVYGV
EIVKEAIDDARSNAELNGMRHVTFEVGASEEVIPRWKEQGIEADVIVVDPPRKGCDPRLL
ETILEMKPERVVYVSCNPSTLARDLRILEDGGYRTVEVQPVDMFPHTTHIENVALLVRK
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagcagcgaaataaagggacagtgggcaggaaggaatcggctggtcgtgcccat
gggtcggcggagcgcgagacaggtatccgcagctctagtaaacgaagcaagaatcgaagt
actggtaatttgcgtggcgctaggaagcagcaggcgcgagaaatcgctggattgcctgtc
agcaaaaacgatgaagtggttatcgatatcatcggcatgaatcacgacggagagggcgtg
ggacgggcagatggctacacgctgtttgtagctggagcgcttccgggcgagaaggcgctg
gtgaaggtgctgaagaccaagaagcagtacggctacgccaagctgcttgagctgcgggag
gttagcccggatcgcgtagctgcgccttgcagcatttacgataagtgcggcggctgtcag
ctgcagcacttaagctacgcaggccagctggcctggaagcgccagcatgtgatcgatgcg
ctggagcgcatcggcaagctgcgcgtggcggagacaggcgatgctggggcggtgctgggc
ggcgatggggctagcgagggagcgggcgctggcacgggcacgggtgctgtagtgtcggaa
gcagtgcgcggtggcaatggggtgagcggtgacagagccgcagaggtgagcgcaggtacg
ggtgtggttaaggtagcagcgaacgacagttctggagtgacaacggtcggttttggtggg
tacgagcttgaaggcgaaggcttagttgcggcggtagaaccgtctgctcacaacggcatc
gttgtactgccgacgttaggcatggctgagccttggcggtatcgcaacaaggcccaggtg
cctgtcggcgtcaccgacggtgctttggtcggcggcttttacgcccgtggcagccaccgc
atcgttgatatggagacgtgcctcatccagcacgagagcaccgacgatgttgtcgcgcgt
gtgaaggcaatcgggcgcaaactcggcatcaccgcctataacgaagagagcggacaaggc
ttgttacgccatgtcgtcgtcaaggtggggttccgtaccggcgaagtgatgcttgtcctc
gtcaccaacgggcaggatattccacatgttgaggcctggattggcctaattcgggaacag
ctcccacaggtggtcagcatttgccagaacattaacacgaagcagaccaacgtcatcttt
ggtgacgaaacccgtgtcctctgggggcgtgatgtcatttatgattatatcggagacgtg
cagtttgcgatctcggcgcgttccttttatcaagtgaatccagtgcaaacggaagtgtta
tacagcaagacggtggaatatgcggggttgaccggaagagagaccgtcatcgacgcctat
tgcggcattgggacgatttccttgttcctggcgcagcacgctgaacgcgtatatggggta
gaaatcgttaaggaagcgatcgacgacgcccgcagcaatgccgagttaaacgggatgagg
catgtgacgtttgaggtgggagcttcggaggaggtcatcccccgctggaaggagcagggc
atcgaagcagatgtaattgtggtcgatcctccgcgcaaaggctgcgatcctcgcttactg
gagacaatcctggaaatgaagccagagcgagtcgtctatgtaagctgtaatccttcaacg
ctggcaagggatctgcggattctggaggatggtgggtaccggacggtggaggtgcagccg
gtggatatgttcccgcatacaacacatatcgaaaacgtagcattgttggttaggaagtga
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