Pleomorphomonas sp. SM30: OHA_1_00216
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Entry
OHA_1_00216 CDS
T05766
Symbol
rnd_1
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pleo
Pleomorphomonas sp. SM30
Brite
KEGG Orthology (KO) [BR:
pleo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pleo03016
]
OHA_1_00216 (rnd_1)
Enzymes [BR:
pleo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
OHA_1_00216 (rnd_1)
Transfer RNA biogenesis [BR:
pleo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
OHA_1_00216 (rnd_1)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
BBE70652
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All DBs
Position
1:complement(230797..231984)
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AA seq
395 aa
AA seq
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MTMITTISALAEACTHLARFDAVTVDTEFLRETTFWPKLCVVQMASPERAFVVDALAPGL
DLSPFFDLMRDEAVLKVFHAARQDIEIIWHLGGFVPHPVFDTQVAAMVCGFGDSISYDQL
VARVSGAHIDKTHRFTDWTRRPLSASQLAYAEADVTHLRDVYRHLAATLERKGRTDWVAE
EMEVLTSPETYRSDPDEAWLRLRMRLKKSRELIVLKEVAAWREREAQGRDVPRSRVLKDD
TLFEIATHAPTTVAALGELRTVPRGWERSRAGEDVVAAVTRALEIPKEQWPRAPKGRQAP
EGSGAVVDLLKVLLKQVSDDEGVAAKIIATVDELEEIAADDGADVPALRGWRRELFGERA
LAVKRGEIAFAYDGKRVVTVEMPGRAPAAAKSAAE
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgatcaccaccatctccgccctcgcggaagcctgcacccatctcgcccggttc
gacgcggtgacggtggataccgagttcctccgggaaacgaccttctggccgaagctgtgc
gtcgtacagatggcgagccccgagcgggccttcgtcgtcgacgccctcgcccccgggctc
gacctttcgcccttcttcgacctgatgcgggacgaggcggtgctgaaggtgttccacgcc
gcccggcaggacatcgagatcatctggcacctcggcggcttcgtgccccacccggtgttc
gacacccaggtcgcggcgatggtctgcggcttcggcgactcgatctcctacgaccagctg
gtcgcccgcgtcagcggcgcccacatcgacaagacccaccgcttcaccgactggacgcgc
cggccgctgtcggcgagccagctcgcctacgccgaggcagacgtcacccacctgcgcgac
gtctaccgccacctcgcggcgacgctggagcgcaagggtcgcaccgactgggtcgccgag
gagatggaggtcctgacctcgccggagacctaccgctccgatcccgacgaggcctggctc
cgcctcaggatgcggctgaagaagtcgcgtgagctgatcgtgctcaaggaagtcgccgcc
tggcgcgagcgcgaggcccagggccgcgacgtgccgcgctcgcgcgtgctcaaggacgac
accctgttcgagatcgccacccacgccccgaccacggtcgccgccctcggcgagctgcgc
accgtgccgcgcggctgggagcgctcgagggccggcgaggacgtggtcgccgccgtgacg
cgggcgctcgagatccccaaggagcagtggccgcgcgcgcccaagggccgtcaggcgccc
gagggctccggcgcggtggtcgaccttctcaaggtgctgctgaagcaggtcagcgacgac
gagggcgtcgccgccaagatcatcgccaccgtcgacgaactcgaggagatcgccgccgac
gacggggccgacgtgccggcgctgcgcggctggcgccgcgagctgttcggcgagcgcgcc
ctcgcggtcaagcgcggcgagatcgccttcgcctacgacggcaagcgcgtcgtcaccgtc
gagatgcccggccgggcaccggcggcggccaagtccgcggcggagtga
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