Pleomorphomonas sp. SM30: OHA_1_01025
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Entry
OHA_1_01025 CDS
T05766
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pleo
Pleomorphomonas sp. SM30
Pathway
pleo03030
DNA replication
pleo03430
Mismatch repair
pleo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pleo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OHA_1_01025 (dnaE1)
03430 Mismatch repair
OHA_1_01025 (dnaE1)
03440 Homologous recombination
OHA_1_01025 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pleo03032
]
OHA_1_01025 (dnaE1)
03400 DNA repair and recombination proteins [BR:
pleo03400
]
OHA_1_01025 (dnaE1)
Enzymes [BR:
pleo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OHA_1_01025 (dnaE1)
DNA replication proteins [BR:
pleo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OHA_1_01025 (dnaE1)
DNA repair and recombination proteins [BR:
pleo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OHA_1_01025 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
DUF655
Motif
Other DBs
NCBI-ProteinID:
BBE71451
LinkDB
All DBs
Position
1:complement(1117659..1121120)
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AA seq
1153 aa
AA seq
DB search
MADDIGFVHLRVHSAYSLLEGALPLSKILKLADADAQPAIAVTDTGNLFSALEFSEKAAE
KGIQPIVGCELAVDFGDEPADRRRPGAPAQGLPSIVLIAATQRGFDNLTILVSRSFMETE
PGARPHLPFDRLADRADGILALTGGPNGPVDRAIAAGHGAVAAGRLARLAALFGDRLYVE
LQRHGTPAEALVEPELVALAYGAGLPLVATNECYFPARGDYEAHDALIAIAEGRVIADDD
RRRLTPEHYLKSRAEMTAVFHDLPEALANTVEIARRVSYRPRKRKPILPRFAGADVDDVA
LAEKAEAEELARQAWEGLERRLEVHGLAPGLTVEDYRDRLGFELGIITKMKFPGYFLIVA
DFIKWAKAHGIPVGPGRGSGAGSLVAWSLTITDLDPMRFALLFERFLNPERVSMPDFDID
FCQDRREEVIRYVQGKYGREQVAQIITFGTLQARAVLRDVGRVLQLPYGQVDKLCKLVPQ
NPANPVTLGQALEDEPRLKEARRDDPVVDRLIDMAMKLEGLYRHASTHAAGIVIGDRPLD
QLVPVYRDPRSDMPVTQYNMKWVESAGLVKFDFLGLKTLTVLETAVKLIARRGISIDLSA
LPLDDPATYALLSKGETVGVFQLESMGMRKAIADIEPDRFEDIIALVALYRPGPMANIPV
YGAVKHGREAANYIHPKLEPVLKETYGIIVYQEQVMQIAQILSGYSLGEADLLRRAMGKK
IKAEMDAQRVRFVAGAVKDGLDEAQANMIFDLLAKFADYGFNKSHAAAYALVAYQTAYLK
ANHPVEFMAASMTLDAANTDKLNDFRREAIRLGIEVVPPSVNRSHVDFEVEDGRILYALG
AVKGVGRHAVEHVVEVRGDRPFRDVADFAHRINPKALNKRILESLVAAGAFDGLEPNRAR
LFEGLDKVMAAANKRLDDEAAGQGGFSFGGPANAAAAIPLPSRSDWLPDERLQREHGAIG
FYLSAHPLDAYGPLLERLRVQMWGQFSAGVKRGATAGRLAGTVVARQERKTRTGNKMGIL
TVSDPTGQYEAVIFSEGLSHYRDLLEPGQSVILLVSAEDKPEGISVRIDSVEPLDQAAGR
LQHALRIFLRGPEPVESIHRHLAGGGEGDVSLIVLAEGGRGEVEVRLPGRYKVSPQIAGA
LRAVPGVVQVELA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgacatcggcttcgtgcaccttcgcgtccacagcgcctactcgctgctggaa
ggcgcgctgccgctctccaagatcctgaaactcgccgacgccgacgcccagccggccatc
gccgtgaccgacaccggcaacctgttttccgcgctcgagttctccgagaaggcggccgag
aagggcatccagccgatcgtcggctgcgagctcgcggtcgacttcggcgacgagccggcc
gaccgccggcggcccggcgctccggcccaggggctgccctcgatcgtgctgatcgcggcg
acccagcgcggcttcgacaacctgaccatcctggtctcgcgctccttcatggagaccgag
ccgggcgcgcgcccgcacctgccgttcgaccgcctcgccgaccgcgccgacggcatcctc
gccctgaccggcggcccgaacggtccggtcgaccgggcgatcgcggccggtcacggcgcg
gtggcggccggccggctggcgcggctcgcggccctgttcggcgaccggctctacgtcgag
ctgcaacgccacggcacgccggccgaggcgctggtcgaacccgaactcgtcgcgctcgcc
tacggcgccggcctgccgctggtggcgaccaatgagtgctatttcccggcccgcggcgac
tacgaggcccacgacgcgctgatcgcgatcgccgagggccgcgtcatcgccgacgacgac
cgccgccgcctgacgccggagcactacctgaagtcccgcgccgagatgacggcggtgttc
cacgacctgccggaggcgctcgccaacaccgtcgagatcgcccgccgcgtcagctaccgg
ccgcgcaagcgcaagccgatcctgccgcgtttcgccggcgccgacgtcgacgacgtcgcc
ctcgccgagaaggccgaggccgaggagctggcgcggcaggcctgggaggggctggagcgc
cggctcgaggtgcacggcctcgcgcccggcctgacggtcgaggactaccgcgaccgcctc
ggcttcgagctcggcatcatcaccaagatgaagttccccggctatttcctgatcgtggcc
gacttcatcaagtgggccaaggcccacggcatcccggtcgggccgggccgcggttcgggc
gccggctcgctggtggcgtggtcgctgaccatcaccgacctcgacccgatgcgcttcgcc
ttgctgttcgagcgcttcctcaacccagaacgcgtctcgatgccggacttcgacatcgac
ttctgccaggaccggcgcgaggaggtgatccgctacgtccagggcaagtacggccgcgag
caggtcgcgcagatcatcaccttcggtaccctgcaggcgcgtgccgtgctgcgcgacgtc
gggcgcgtgctccagctgccctacggtcaggtcgacaagctctgcaagctggtgccgcag
aacccggccaacccggtgacgctcgggcaggcgctcgaggacgagccgcggctgaaggag
gcccgccgcgacgatccggtcgtcgaccgcctgatcgacatggcgatgaagctcgagggt
ctctaccgccacgcctcgacccacgccgccggcatcgtgatcggcgaccgcccgctcgac
cagctggtgccggtctaccgcgatccgcgctcggacatgccggtcacccagtacaacatg
aagtgggtggagagcgccgggctggtgaagttcgacttcctcggcctgaagacgctgacc
gtgctcgagaccgcggtcaagctgatcgcccggcgcggcatttcgatcgacctctcggcc
ctgccgctcgacgatcccgcgacctacgcgctgctctccaagggcgagaccgtcggcgtg
ttccagctggaatcgatgggcatgcgcaaggccatcgccgacatcgagcccgaccgcttc
gaggacatcatcgcgctggtggcgctctaccgcccggggccgatggccaacatcccggtc
tacggcgcggtcaagcacggccgcgaggccgccaactacatccaccccaagctcgagccg
gtgctgaaggagacctacggcatcatcgtctaccaggaacaggtgatgcagatcgcgcag
atcctgtccggctactcgctcggcgaggccgacctcctgcgccgcgccatgggcaagaag
atcaaggccgagatggacgcccagcgcgtccgcttcgtcgccggcgccgtgaaggacggc
ctcgacgaggcgcaggccaacatgatcttcgacctgctcgccaagttcgccgactacggc
ttcaacaagtcccacgccgccgcctacgccctcgtcgcctaccagaccgcctatctgaag
gccaaccacccggtcgagttcatggcggcctcgatgacgctcgacgccgccaacaccgac
aagctcaacgacttccgccgcgaggcgatccgcctcggcatcgaggtggtgccgccctcg
gtcaaccgctcgcacgtcgacttcgaggtcgaggacggccggatcctctacgccctcggc
gccgtcaagggcgtcggccgccacgccgtcgagcacgtcgtcgaggtccgcggcgaccgg
ccgttccgcgacgtcgccgacttcgcccaccgcatcaaccccaaggcgctcaacaagcgc
atcctggagagcctcgtcgccgccggcgccttcgacggcctcgagcccaaccgcgcccgg
ctgttcgagggcctcgacaaggtgatggccgccgcgaacaagcggctcgacgacgaagcg
gccgggcagggcggcttcagcttcggcggcccggccaacgccgccgcggcgatcccgctg
ccgtcgcgctccgactggctgcccgacgagcgcctgcagcgcgagcacggcgcgatcggc
ttctacctctccgcccacccgctcgacgcctacggcccgctgctggagcggctgcgcgtc
cagatgtgggggcagttctcggccggcgtgaagcgcggcgccaccgccggccgcctcgcc
ggcacggtggtggcgcgccaggagcgcaagacccgcaccggcaacaagatgggcatcctc
accgtctccgacccgaccgggcagtacgaggcggtgatcttctccgagggcctgtcgcac
taccgcgacctgctcgaacccggccagtcggtgatcctgctcgtctccgccgaggacaag
cccgagggcatctcggtccggatcgacagcgtcgaaccgctcgatcaggctgccggacgt
ctgcagcacgcgctgcgcatcttcctgcgcggacccgagccggtcgagagcatccaccgc
cacctcgccggcggcggcgagggcgacgtctcgctgatcgtgctcgccgagggcgggcgc
ggcgaggtcgaggtgcggctgcccggccgctacaaggtctcgccgcagatcgccggcgcg
ctgcgcgcggtgccgggggtggtgcaggtcgaactcgcctga
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