Pleomorphomonas sp. SM30: OHA_1_01063
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Entry
OHA_1_01063 CDS
T05766
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pleo
Pleomorphomonas sp. SM30
Brite
KEGG Orthology (KO) [BR:
pleo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pleo03032
]
OHA_1_01063 (topA)
03400 DNA repair and recombination proteins [BR:
pleo03400
]
OHA_1_01063 (topA)
Enzymes [BR:
pleo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OHA_1_01063 (topA)
DNA replication proteins [BR:
pleo03032
]
Prokaryotic type
DNA Topoisomerases
OHA_1_01063 (topA)
DNA repair and recombination proteins [BR:
pleo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OHA_1_01063 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
zf-C4_Topoisom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BBE71488
LinkDB
All DBs
Position
1:1157092..1159836
Genome browser
AA seq
914 aa
AA seq
DB search
MNLVIVESPAKAKTINKYLGKDFQVLASYGHVRDLPAKDGSVDPDQDFSMTWEVDGKAGK
RLADIAAAAKTSDRVILATDPDREGEAISWHVLEVLNAKRVLKGKPVQRVVFNAITKQAV
LDAMAKPRDIDEPLVAAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCAR
ENEIETFKSQEYWQILARLATPAGDEFEARLTEWEGRKVGRLDVKDEASASAIRRFLEGA
AFAVEQVESKPQRRNPSAPFTTSTLQMEASRKHGFSAQRTMQIAQRLYEGVDVGGGETVG
LITYMRTDGVQIAPEAIAATRAVITREYGERYLPEKPRHYSTKAKNAQEAHEAIRPTDLG
RLPRAVAPFLEDEQAKLYELIWKRTVASQMESAEFERTTADIAATKDGARAGLRATGSVV
RFDGFLTLYQEGRDDEEDEDGGRLPRMARGDALARRSIAATQHFTEPPPRYTEATLVKKM
EELGIGRPSTYASTLATLRDRDYVAVDKKRLIPSDKGRIVTAFLESFFDRYVEYDFTAGL
EEDLDRISAGELEWREVLRRFWDEFNKRIADVKELRVAQVLDALNDGLAAHVFPARADGS
DPRSCPTCGTGRLSLKLGKFGAFIGCSNYPECRYTRQLGTGSGDDQAEGIGGDGTKVLGT
DPKTGLEVSLRSGRFGPYVQLGEGDKPKRSSLPKGWTVDQIDLAKALTLLELPRQVGAHP
ETGKPIEANIGRYGPYVAHDGVYANLDSVDEVFTVGLNRAVAVLAEKKEKGGRGRSTPAA
LKTLGEHPVAGGEITVRDGRYGPYVAWGKVYATLPKGSDPQAVTVEQAVALLTEKAGKAP
VAKAKPTAKKAAAKTADDAEKKPAKAKAKTAAKAEAADGEAPAAAAKKPARAKAAAKTAA
EDAAPAKPRARKAS
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcgtgatcgtggaatcgcccgccaaggcgaagaccatcaacaagtacctgggc
aaggactttcaggtcctggcctcctacggtcacgtccgcgacctgccggccaaggacggg
tcggtcgatcccgaccaggacttctcgatgacgtgggaagtggacggcaaggccggcaag
cgcctcgccgacatcgccgcggcggcgaagacctccgaccgggtcatcctcgccaccgac
cccgaccgcgagggcgaggcgatctcctggcacgtgctcgaggtgctgaacgccaagcgc
gtgctgaagggcaagccggtgcagcgggtggtgttcaacgccatcaccaagcaggccgtg
ctcgacgccatggccaagccgcgcgacatcgacgagccgctggtggccgcctatctcgcc
cgccgcgcgctcgactatctcgtcggcttcacgctgtcgccggtgctgtggcgcaagctg
ccgggcgcccgttcggccggccgggtgcagtcggtggcgctgcgcctcgtctgcgcccgc
gaaaacgagatcgagaccttcaagtcgcaggaatactggcagatcctcgcccggctggcg
acgccggccggcgacgagttcgaggcccgcctgaccgagtgggagggccgcaaggtcggt
cgcctcgacgtcaaggacgaggcgagcgccagcgcgatccgccgcttcctcgagggcgcg
gccttcgcggtcgagcaggtcgaatcgaagccgcagcggcgcaatccgtcggcgcccttc
accacctcgacgctgcagatggaggcctcgcgcaagcacggcttctcggcccagcgcacc
atgcagatcgcccagcgcctctacgagggcgtcgacgtcggtggcggcgagaccgtcggc
ctgatcacctacatgcgaaccgacggcgtccagatcgcccccgaggcgatcgccgccacc
cgtgcggtgatcacgcgcgaatacggcgaacgctacctgccggaaaagccgcgccactat
tccaccaaggccaagaacgcccaggaggcccacgaggcgatccgcccgaccgacctcggc
cggctgccgcgcgcggtcgcgcccttcctcgaggacgagcaggccaagctctacgagctg
atctggaagcgcaccgtcgccagccagatggagagcgccgagttcgagcgcaccaccgcg
gacatcgccgcgacgaaggacggcgcccgcgccgggctgcgcgccaccggctcggtcgtg
cgcttcgacggcttcctgaccctctaccaggagggccgcgacgacgaggaggacgaggac
ggcggccggctgccgcggatggcgcgcggcgacgccctcgcccgccgctcgatcgccgcc
acccagcacttcaccgagccgccgccgcgctacaccgaggcgacgctggtcaagaagatg
gaggagctcggcatcggccggccctcgacctacgcctcgacgctcgccacgctgcgcgac
cgcgactacgtcgccgtcgacaagaaacgcctgatcccctccgacaagggccggatcgtc
acggccttcctcgagagcttcttcgaccgctacgtcgaatacgacttcacggccggcctc
gaggaggacctcgaccgcatctcggccggcgaactcgagtggcgcgaggtgctgcgccgc
ttctgggacgagttcaacaagcgcatcgccgacgtcaaggaactgcgcgtcgcccaggtg
ctcgacgccctcaacgacggcctcgccgcccacgtcttccccgcccgcgccgacgggtcc
gacccgcgcagctgcccgacctgcggcaccggccggctctcgctgaagctcggtaagttc
ggcgccttcatcggctgctcgaactatccggagtgccgctacacccgccagctcggcacc
ggctcgggcgacgatcaggccgagggcatcggcggcgacggcaccaaggtgctcggcacc
gacccgaagaccggcctcgaggtgtcgctgcgctccggccgcttcgggccctacgtccag
ctcggcgagggcgacaagccgaagcgctcgtcgctgccgaagggttggaccgtcgaccag
atcgacctcgccaaggcactgacgctgctcgagctgccgcgacaggtcggcgcccatccg
gagacaggcaagccgatcgaggccaacatcggccgctacggcccctacgtcgcccacgac
ggcgtctacgccaacctcgactccgtcgacgaggtgttcacggtcggcctcaaccgcgcc
gtcgccgtgctcgccgagaagaaggagaagggcggccgcggccgttcgactccggcggcg
ctgaagaccctcggcgagcatccggtcgccggcggcgagatcacggtccgcgacggccgc
tacggcccctacgtcgcctggggcaaggtctacgccacgctgccgaagggttcggacccg
caggcggtgacggtcgagcaggcggtcgctctcctcaccgagaaggccggcaaggccccc
gtcgccaaggccaagccgacggcgaagaaggccgccgccaagaccgccgacgacgccgag
aagaaacccgccaaggccaaggccaagacggcggccaaggccgaggccgccgacggcgag
gctccggccgccgccgcgaagaagccggcccgggcgaaggcggcggcgaagaccgccgcc
gaggacgccgcgcccgccaagccgcgcgcccgcaaggcctcgtga
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