Pleomorphomonas sp. SM30: OHA_1_01171
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Entry
OHA_1_01171 CDS
T05766
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pleo
Pleomorphomonas sp. SM30
Pathway
pleo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pleo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OHA_1_01171 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pleo03019
]
OHA_1_01171 (deaD)
03009 Ribosome biogenesis [BR:
pleo03009
]
OHA_1_01171 (deaD)
Enzymes [BR:
pleo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OHA_1_01171 (deaD)
Messenger RNA biogenesis [BR:
pleo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OHA_1_01171 (deaD)
Ribosome biogenesis [BR:
pleo03009
]
Prokaryotic type
rRNA helicases
OHA_1_01171 (deaD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF6175
Motif
Other DBs
NCBI-ProteinID:
BBE71593
LinkDB
All DBs
Position
1:1264709..1266400
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AA seq
563 aa
AA seq
DB search
MPFTVDNALVAQALADRGYTEPTPVQAAVADPALGGADLLVSARTGSGKTVAYGLAMVPT
LLDGAERFPGPTTPKALVVAPTRELALQVHRELAWLYGKAGGRVLTCVGGMDPQREKKAL
AMGADVVVGTPGRLRDHMERGRLITDDLSAVVLDEADEMLNLGFREDLEFILGATPTDRR
TLLFSATLPAEIVRLATRFQREAVRIDVTEDDTGHADIDYRALRIAGHEIEKAVVNVLRW
YEARAAIVFCATREAVRRLHGALQERGFQVVALSGEMTQADRNQALTSMRDGRARVCVAT
DVAARGIDLPDLGLVVHAELPNDPEVLTHRSGRTGRAGRKGTAVLLVPHSRRRKAESLLA
GAGVVAEWAGAPTAEEIRRLDGERLAADPMLTEEPTEEDLELARRLAEGRSSEELAAALI
RYARVGLPSPEELIVPAAERPERRAAAEGPRVDEGAVWFRLAVGRRDGAEVRHILPLICR
RAAIPKREIGTIRIGDRETLFAVTAAAAGQVAFAAANGGPGDVPIAPADGEPVAPQRRRF
KDDGRPAPAGRPTKPPRRKERHG
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcccttcaccgtcgacaacgccctggtggcgcaagccctcgccgaccgcggctacacc
gaaccgaccccggtgcaggccgcggtggccgatcccgccctcggcggcgccgacctcctc
gtgtccgcccgcaccggctccggcaagaccgtcgcctacggcctcgccatggtgccgacg
ctgctggacggcgccgagcgcttccccggcccgaccacgccgaaggcgctggtcgtggcg
ccgacgcgcgaactggcgctccaggtccaccgcgagctcgcctggctctacggcaaggcc
ggcgggcgggtgctgacctgcgtcggcggcatggatccgcagcgcgagaagaaggcgctc
gctatgggcgccgacgtggtggtcggcacgcccggccgcctgcgcgaccacatggagcgc
ggccgcctgatcaccgacgatctcagcgccgtcgtgctcgacgaggccgacgagatgctg
aacctcggcttccgcgaggatctcgagttcatcctcggcgccacgccgaccgatcgccgc
acgctgttgttctccgccacgctgccggccgagatcgtccgcctcgccacccgcttccag
cgcgaggccgtgcgcatcgacgtcaccgaggacgacaccggccacgccgacatcgactac
cgcgccctgcgcatcgccggccacgagatcgagaaggccgtcgtcaacgtgctgcgctgg
tacgaggcgcgcgccgccatcgtgttctgcgccacccgcgaggcggtgcgccgcctgcac
ggcgcgctgcaggagcgcggcttccaggtcgtcgccctctccggcgagatgacccaggcc
gaccgcaaccaggcgctgacctcgatgcgcgacggccgcgcccgcgtctgcgtcgccacc
gacgtcgccgcccgcggcatcgacctgcccgacctcggcctcgtcgtccacgccgagctg
ccgaacgacccggaggtgctgacgcaccgctccggccgcaccggccgcgccggtcgcaag
ggcaccgcggtgctgctggtgccgcattcgcgccgccgcaaggccgagagcctgctcgcc
ggcgccggcgtcgtcgccgaatgggccggcgcgccgaccgccgaggagatccgccgcctc
gacggcgagcgtctcgccgccgacccgatgctgaccgaggaaccgaccgaggaggatctc
gagctcgcccgccgcctcgccgagggccgcagctccgaggaactcgccgccgcgctgatc
cgctacgcccgcgtcggcctgccctcgcccgaggagctgatcgtgcccgccgcagagcgg
ccggagcgccgcgccgccgccgagggcccgcgcgtggacgagggcgccgtctggttccgc
ctcgccgtcggccgccgcgacggcgccgaggtccgccacatcctgccgctgatctgccgg
cgcgccgcgatcccgaagcgcgagatcggcaccatccgcatcggcgaccgcgagacgctg
ttcgccgtcaccgccgccgccgccggccaggtcgccttcgccgccgccaacggcggcccc
ggcgacgtgccgatcgcccccgccgacggcgagccggtcgccccgcagcgccgtcgcttc
aaggacgacggccgcccagcccccgccggccgccccaccaagccgccgcgccgcaaggaa
cgccacggctga
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