Pleomorphomonas sp. SM30: OHA_1_01288
Help
Entry
OHA_1_01288 CDS
T05766
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pleo
Pleomorphomonas sp. SM30
Pathway
pleo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pleo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OHA_1_01288 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pleo03021
]
OHA_1_01288 (rpoC)
03400 DNA repair and recombination proteins [BR:
pleo03400
]
OHA_1_01288 (rpoC)
Enzymes [BR:
pleo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OHA_1_01288 (rpoC)
Transcription machinery [BR:
pleo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OHA_1_01288 (rpoC)
DNA repair and recombination proteins [BR:
pleo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OHA_1_01288 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
BBE71706
LinkDB
All DBs
Position
1:complement(1389248..1393456)
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQAPVQTFDQIKISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMPLKDLERILYFEHYVVTEPGLTPLKLHQLLSEQEYMRAQDEYGEDSFTA
LIGAEAIRELLQSLNLAKLAERLRQEIAESTSELKPKKLAKRVNIIEAFIESGNKPEWMV
MSVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PEMKLHQCGLPKKMALELFKPFIYSRLDAKGYSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDIVLGLYYLSIMNEGEPGEDMVFSDMGELQHALD
TGAVTLHTKIRGRYRGVDKDGNVTSKIYVTSPGRMKIAELLPKHHAVPFDLCNELMTKKK
ISGMIDAVYRHCGQKESVIFCDRIMALGFREACNAGISFGKDDMVIPETKHNLVEETRAL
VNDYEQQYSDGLITQGEKYNKVVDAWAKCTDRVADEMMKRISAVRKDDAGRTRPMNSIYM
MSHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITEVDCGASDEGLRMQAIVDAGQVVATLGARILGRT
AAEDITVPATGEVVVPKGKLIEERDVEKVEKAGIQSVKIRSVLTCQTKLGVCAKCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDSSFIESNFEGTVRIRNRN
VVRDSDGKLIAMGRNLAVVVVDDAGNERSTHRVTYGARLHVDDGDKIKRGQRVAEWDPYT
RPVLTEVEGVVGFEDLVEGASVSETADEATGITKRVVIDWRGSSRTSDLKPAMVVKGADG
KILKLSKGGDARYLLSVDSILSVEPGATVHAGDVLARIPLESAKTRDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRFGRDYKNKRRVIIEPHDASLEPKEYLIPKGKHFHLQEGDVVE
KGDYIVDGNPAPHDILAIKGVEALAAYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
VTDGGDTDLMGGDQVDRIELDDINARTVEEGKKPAIAHPVLLGITKASLQTRSFISAASF
QETTRVLTEAAVNGKTDTLEGLKENVIVGRLIPAGTGGMMNRIRQVATRRDELILEERRK
DALGEGSGVPVGDVMEMQTPAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaaccttttcaacccgcaggctcccgtacagaccttcgaccag
atcaagatctcgatcgcgagcccggaaaagatcctttcgtggtcctacggcgagatcaag
aagcccgagaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcg
cgcatcttcggaccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgcgagaagtgcggcgtcgaggtgacgctgagccgcgtgcgccgc
gagcgcatgggccacatcgagctcgccgcgcctgtcgcgcacatctggttcctgaagtcg
ctgccgagccgcatcggcctgctgctcgacatgccgctcaaggacctcgagcgcatcctc
tacttcgaacactacgtcgtcaccgagcccggtctcaccccgctgaagctgcaccagctg
ctcagcgagcaggagtacatgcgcgcccaggacgagtacggcgaggactcgttcacggcc
ctgatcggcgccgaggcgatccgcgagctcttgcagtcgctgaacctcgccaagctggcc
gagcgcctgcgccaggagatcgccgagtcgacctccgagctgaagccgaagaagctcgcc
aagcgcgtcaacatcatcgaggccttcatcgaatccggcaacaagccggagtggatggtg
atgtcggtgatcccggtcatcccgccggacctgcgcccgctggtcccgctggacggcggc
cgcttcgcgacctccgacctcaacgacctctaccgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatcgagctgcgcgcgcccgacatcatcatccgcaacgagaagcgcatg
cttcaggaggcggtggacgcgctgttcgacaacggccgccgcggccgcgtcatcacgggc
gccaacaagcgtccgctgaagtcgctcagcgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactactccggccgttcggtcatcgtggtcggc
ccggagatgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctactcgcggctcgacgccaagggctactcgtcgaccgtgaagcaggcgaag
aagctcgtcgagaaggagcgcccggaggtctgggacatcctcgacgaggtgatccgcgag
catccggttatgctgaaccgcgccccgacgctgcaccgcctcggcatccaggccttcgag
ccggtgctgatcgagggcaaggcgatccagctgcacccgctggtctgctctgccttcaac
gcggacttcgacggcgaccagatggccgtgcacgttcccctgagcctcgaggcccagctg
gaagcgcgcgtcctgatgatgtcgacgaacaacatcctgcaccccgcgaacggcgcgccg
atcatcgtgccgtcgcaggacatcgtgctcggcctctactacctctcgatcatgaacgag
ggtgagccgggcgaggacatggtgttctccgacatgggcgagctgcagcacgcgctcgac
accggcgcggtgacgctgcacaccaagatccgcggccgctatcgcggcgtcgacaaggac
ggcaacgtcacgtcgaagatctacgtgaccagcccgggccggatgaagatcgcggagctt
ctgccgaagcaccacgcggtgccgttcgacctctgcaacgagctgatgacgaagaagaag
atctccgggatgatcgatgccgtctaccggcattgcggtcagaaggaatcggtcatcttc
tgcgaccgcatcatggcgctcggcttccgcgaggcctgcaacgcgggcatctcgttcggc
aaggacgacatggtcatccccgagacgaagcacaatctcgtcgaggagacccgcgccctc
gtcaacgactacgagcagcagtactccgacggcctgatcacccagggcgagaagtacaac
aaggtcgtcgacgcctgggccaagtgcaccgaccgcgtcgccgacgagatgatgaagcgc
atctcggccgtccgcaaggacgacgccggccgcacccgtccgatgaactcgatctacatg
atgagccattcgggcgcccgtggttcgccggctcagatgaagcagctcgccggcatgcgc
ggcctgatggcgaagcctagcggagagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctgaccgttctcgagtacttcaactcgacgcacggcgcccgcaagggtctggcc
gacaccgcgctgaagaccgccaactcgggctacctgacccgtcgtctcgtcgacgtggcg
caggactgcatcatcaccgaggtcgactgtggcgcctccgacgagggcctgcgcatgcag
gcgatcgtcgacgccggtcaggtggtcgccacgctcggcgcccgcatcctgggccgcacc
gcggccgaggacatcaccgtccccgccaccggcgaggtcgtggtgcccaagggcaagctg
atcgaggagcgcgacgtcgagaaggtcgagaaggccggcatccagtcggtcaagatccgc
tcggtgctgacctgccagaccaagctcggcgtctgcgccaagtgttacggtcgcgacctc
gcgcgcggcacgcccgtcaacatgggcgaggccgtgggcgtcatcgcggcgcagtcgatc
ggcgagccgggcacccagctcaccatgcgcacgttccacatcggcggcacggcgcaggtg
gtcgactcgtcgttcatcgagtcgaacttcgagggcacggtccggatccgcaaccgcaac
gtggtgcgcgactccgacggcaagctgatcgccatgggccgcaacctcgcggtcgtggtg
gtggacgacgccggcaacgagcgttcgacccaccgcgtcacctacggtgcgcgcctgcac
gtcgacgacggcgacaagatcaagcgcggccagcgcgtcgccgagtgggacccgtacacc
cgtccggtgctcaccgaggtcgagggcgtggtcggcttcgaggatctggtcgagggcgcc
tcggtgtcggagaccgccgacgaggcgaccggcatcaccaagcgcgtcgtcatcgactgg
cgcggctcctcgcgcacgtcggacctgaagccggcgatggtggtcaagggcgccgacggc
aagatcctgaagctgtcgaagggcggtgacgcccgctacctgctctcggtcgactcgatc
ctctcggtcgagccgggcgcgacggtgcacgccggcgacgtgctggcgcgtatcccgctg
gagagcgccaagacccgcgacatcaccggcggtctgccgcgcgtcgccgagctgttcgag
gcccgtcgtccgaaggatcacgcgatcatcgcggagatcgacggcacgatccgcttcggc
cgcgactacaagaacaagcgccgcgtcatcatcgagccgcacgacgcgtcgctggagccc
aaggaatacctgatccccaagggcaagcacttccatctccaggaaggcgacgtcgtggag
aagggcgattacatcgtcgacggcaacccggcgccgcacgacatcctggcgatcaagggc
gtggaggctctcgcggcctacctcgtcaacgagatccaggaggtctaccggctccagggc
gtggtgatcaacgacaagcacatcgaggtgatcgtccgccagatgctgcagaaggtcgag
gtcaccgacggcggcgacaccgacctgatgggcggcgaccaggtcgaccgcatcgagctc
gacgacatcaacgcccggacggtcgaagagggcaagaagccggcgatcgcccacccggtg
ctgctcggcatcaccaaggcgtcgctgcaaacccgctcgttcatctcggcggcgtcgttc
caggagaccacccgcgtcctcaccgaggcggcggtcaacggcaagaccgacaccctggaa
ggcctcaaggagaacgtcatcgtcggccgtctgatcccggccggcaccggcggcatgatg
aaccgcatccgccaggtcgccacccggcgcgacgagctgatcctcgaggagcgccgcaag
gacgccctcggcgagggctccggcgtgcccgtgggcgacgtgatggagatgcagaccccg
gccgagtga
DBGET
integrated database retrieval system
