Pleomorphomonas sp. SM30: OHA_1_01464
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Entry
OHA_1_01464 CDS
T05766
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pleo
Pleomorphomonas sp. SM30
Brite
KEGG Orthology (KO) [BR:
pleo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pleo03400
]
OHA_1_01464 (sbcC)
DNA repair and recombination proteins [BR:
pleo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
OHA_1_01464 (sbcC)
Archaeal homologous recombinant proteins
OHA_1_01464 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
MMR_HSR1
AAA_21
AAA_15
Motif
Other DBs
NCBI-ProteinID:
BBE71879
LinkDB
All DBs
Position
1:complement(1578599..1582345)
Genome browser
AA seq
1248 aa
AA seq
DB search
MRLLAVRGRNIASLAEPFELDLSAEPLASAGLFAIVGRTGAGKSSILDALCIALYGACPR
NEVGDGGEEVPDGPGRTLKAGDPRTCVSRGAAEAFAEADFVGVDGVTYRARWAVRRARNR
VDGTLQKVERSVTDLDRGVVVANQVTEAGAVVVDRTRLTFAEFCRTVLLPQGQFDALLAA
NAKDRAALLEKITGTGHYRDISIAAHRHAADAAARVHDHETRRAATGVLADDDRAALDAE
RGALDAAETADADRRTAVDEALRRHRAVAEAGRRLAAAVASEIAATEAARALDDERAALV
RLAAAEPLRAPRERRDGAAAAVGRAEARHTEATARLDAAATAAADATAAAMRASEAARAG
EERARAFEPLWAEAARLDAELAVALAEETKAAEEATAAAGERDRLDAEAVRLEGVHADAE
RDLVAAATALAATAALEPLAARRDDVLALLADRRTARADAETGHAAARAAHLAERAAADD
LERAAEADRTARDAHARAVADLDRFANDLATRDEPALRARREAAAELFRQVRDLAKAARA
HDTARAEHDAATRRAEAASETIAAAGRAAEAAERERDAADATEKALAGPYERAAAAASAE
AAHLRRVLVPGEACPVCGATDHPVLADDRVAGLLAALKADVDAARARREAAGRTILDAGR
TAARGRGEAEAAAKALAAADGAVAAACADWHTGVEAAGRLGAAAGLALDWPDEPAEAVAT
AALAVVEEAGRSLRAELDAVETLKSAREAAITARDRAADAIAARAATRERLAADRTGHAT
AAALAERDAAAAERRESEAAARLAPHLEVLGIAADRCDESVDDAVRAAADRRAAAVAAHA
AAIRAEAATGPAARDARAAATLAANAATRTADTLAARRDAAAALRDARAALLGGEATAVH
RARVSDELTELRDTAATAAKANSDAAATLAAARADVAGADHALAEARESRVDAETDFADA
LVRLGFDEAGAADLLAVPTDTVAERRAAVAGADDRLREAAAVVAERRIDLADAEAALPPD
TAVEALDGERLALDEAARQRRTRLGAIAAALESDDRARARVTEMETELAAARADAAVWAA
VAEAIGSSDGSKFVKVAQDVTLGVLIELANGHLAYLKPRYVLTRGVGDLAINVIDRDMGD
DTRSVRSLSGGERFLVSLALALALSGLGGRETFADTLFIDEGFGSLDAASLEMAMDALEA
LQGQGRTVGVISHVEGMTERIPVQVRVEAKGGGRSRVQVVAPAGWAGA
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctcctcgccgtccgcggtcgcaacatcgccagcctcgccgagcccttcgagctc
gacctttccgccgagccgctcgcctcggcgggcctgttcgcgatcgtcggacgcaccggc
gccggcaagtcgtcgatcctcgacgcgctctgcatcgccctctacggcgcctgcccgcgc
aacgaggtcggcgacggcggcgaggaggtgccggacggcccgggccggacgctcaaggcc
ggcgatccgcgcacctgcgtctcgcgcggcgccgccgaggctttcgccgaagccgacttc
gtcggcgtcgacggcgtcacctaccgcgcccgctgggcggtgcggcgcgcccgcaaccgc
gtcgacggcacgctgcagaaggtcgagcgctcggtcaccgacctcgatcgcggcgtggtc
gtcgccaaccaggtcaccgaggccggcgccgtcgtcgtcgaccggacgcggctgaccttc
gccgagttctgccgcaccgtgctgctgccccagggccagttcgacgccctgctcgccgcg
aacgccaaggaccgcgccgccctcctcgagaagatcaccggcaccggccactaccgcgac
atctcgatcgccgcccaccgacacgccgcggacgcggccgcccgcgtccacgaccacgag
acccgccgcgccgccaccggcgtcctcgccgacgacgaccgtgccgccctcgacgccgaa
cgcggcgccctcgatgccgcagagaccgccgacgccgaccgccgcaccgccgtcgacgag
gcgctccgccgccatcgcgccgtcgccgaggccggccgacgcctcgccgccgccgtcgcg
tccgagatcgccgcgaccgaggccgcccgcgccctcgacgacgaacgcgccgccctcgtc
cgcctcgccgccgccgagcccctgcgcgcgccgcgcgaacgccgcgacggcgctgccgcc
gccgtcggccgcgccgaggcccgccacaccgaagccaccgcccgcctcgacgccgccgcc
accgcggcggccgacgccaccgccgccgccatgagggccagcgaagccgcgagggccggc
gaggagcgcgcccgcgccttcgagcccctctgggccgaggccgcgcgcctcgacgccgaa
ctcgccgtcgccctcgccgaggagaccaaggccgccgaagaggcaacggccgccgccggc
gagcgcgaccggctggacgccgaggccgtccgcctcgaaggcgtccacgccgacgccgaa
cgggacctcgtcgccgccgccacggcgctcgccgccaccgccgcgctggaaccgctcgcc
gcccgccgcgacgacgtcctggcgttgctcgccgaccgccgcaccgcccgcgccgacgcc
gaaaccggccacgccgccgcccgcgcggcccacctcgccgaacgggccgcggccgacgac
ctcgagcgcgccgccgaggccgaccgtaccgcccgcgacgcccacgcccgcgccgtcgcc
gacctcgaccgcttcgcgaacgacctcgccacccgcgacgagcccgcgttgcgcgcccga
cgcgaggccgccgccgagctgttccggcaagttcgcgacctcgccaaggccgcgcgtgcc
catgacacggcccgcgccgagcacgacgccgcgacccgccgcgccgaggccgcgtccgaa
acgatcgccgcggccgggcgcgccgccgaggccgccgagcgcgaacgcgacgccgccgac
gccaccgagaaggcgctcgccggcccctacgagcgcgccgccgcggccgcttccgcggaa
gccgcgcacctccgccgcgtcctggtgcccggcgaggcctgcccggtctgcggcgcgacc
gaccatcccgtcctcgccgacgaccgcgtcgccggcctgctcgccgccctgaaggccgac
gtcgacgccgcccgcgcccgccgcgaggccgccggccgcacgatcctcgacgccggccgc
accgccgcccgcggccgcggcgaggccgaggccgccgcgaaggcgctcgccgccgccgac
ggcgccgtcgccgccgcctgcgcggactggcataccggcgtcgaggccgccggacggctc
ggcgcggccgccggcctcgcgctcgactggccggacgagcccgccgaagccgtcgccacg
gccgcgctcgccgtggtcgaggaggccggccgcagccttcgcgccgaactcgacgccgtc
gagacgctgaagtcggcgcgcgaggccgcgatcacggcgcgcgaccgcgccgccgacgcc
atcgccgcccgcgccgcgacccgcgaacgcctcgccgccgaccgcaccggtcacgccacc
gccgccgccctcgccgagcgcgacgccgccgccgccgaacgccgcgagtcggaggcggcg
gcccgcctcgccccccatctcgaggtactcggcatcgccgccgaccgctgcgacgagtcc
gtcgacgacgcggtgagggccgccgcggaccgccgcgccgccgccgtcgccgcccacgcc
gccgcgatccgggccgaggccgccaccggcccggccgcccgcgacgcccgtgccgccgcg
accctcgccgcgaacgccgcgacccggacggccgacaccctcgctgcccgccgtgacgcc
gccgccgccttgcgcgatgcccgcgcggcactgctcggcggcgaggcgaccgcggtccac
cgcgcccgcgtctccgatgaactgaccgaactccgcgacaccgccgccaccgccgcgaag
gcgaactcggacgccgccgccaccctcgccgccgcccgcgccgatgtcgccggcgccgac
catgccctcgccgaggcccgcgagtcccgcgtcgacgccgagaccgacttcgcggacgcc
ctcgtgcggctcggcttcgacgaggcgggcgccgccgacctgctcgcggtgcccaccgac
accgtcgccgagcgccgcgccgccgtcgccggcgccgacgaccgcctgcgcgaggccgca
gcggtggtggccgagcgccggatcgacctcgccgacgccgaggccgcgctcccgcccgac
acggccgtcgaagcgctcgacggcgaacgcctcgcgctcgacgaggcggcgcggcagcgc
cggacccggctcggcgccatcgccgccgcgctcgaaagcgacgaccgcgcccgcgcccgc
gtcaccgagatggagaccgaactcgccgccgcccgcgccgacgccgcggtgtgggccgcg
gtcgcggaggcgatcggatcgagcgacggctcgaaattcgtcaaggtcgcccaggacgtc
accctcggcgtgctgatcgagctcgccaacggccatctcgcctacctgaagccgcgctac
gtgctgacgcgcggcgtcggcgacctcgccatcaacgtgatcgaccgcgacatgggcgac
gacacccgctcggtgcgcagcctgtccggcggcgaacgcttcctggtgtcgctggcgctg
gcgctcgccctgtccggactcggcggccgcgagaccttcgccgacaccctgttcatcgac
gagggcttcggctcgctcgacgccgcctcgctcgagatggcgatggacgcgctcgaggcg
ctccagggccagggccgcaccgtcggcgtcatcagccacgtcgagggcatgaccgagcgc
atcccggtccaggtccgcgtcgaggccaagggtggcggccgcagccgtgtccaagtcgtc
gcgccggcgggctgggccggcgcgtga
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