Pleomorphomonas sp. SM30: OHA_1_01508
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Entry
OHA_1_01508 CDS
T05766
Name
(GenBank) eukaryotic DNA topoisomerase I, catalytic core
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pleo
Pleomorphomonas sp. SM30
Brite
KEGG Orthology (KO) [BR:
pleo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pleo03032
]
OHA_1_01508
03400 DNA repair and recombination proteins [BR:
pleo03400
]
OHA_1_01508
Enzymes [BR:
pleo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OHA_1_01508
DNA replication proteins [BR:
pleo03032
]
Prokaryotic type
DNA Topoisomerases
OHA_1_01508
DNA repair and recombination proteins [BR:
pleo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OHA_1_01508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
BBE71923
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Position
1:1626706..1627938
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AA seq
410 aa
AA seq
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MKRTGADDGATGSEPDADLAPTAAGGTEAVRSSPSGRRAAARRRGAAALARRLGLVMVGP
EALSWSRRRSGRGFVYLDGEGRPIRDPAVKARLVALAVPPAYVAVGYAPDPNAHLQAIGR
DAEGRQQYRYHALWEEVRERLKADRLARLATALPRIRRRIVRDLAAAPGERRLALAAVVE
LVTQTAIRPGGESYAREHGTRGAATLLKSDLRRVGGRVELRFRAKGDKAVVCPVTDDRLA
GVLAALAELPGRRLFQYRGEDGTPRPVASGEVNAYLREIAGTAVSLKDFRTLVASAGVLH
ALAGVEPETSERRRNAQVAKAIREAAEVLRNTPAICRRSYLLPAVVRAFEDGTLARFARR
LKRCRSAVRRAEVLAGLIRHARHHDRPPEPPRAAKSATRGRRRGPAGSGA
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggaccggagcggacgacggtgccaccggatcggagccggacgcggatctcgcc
cccaccgcagcgggcgggacggaggccgtgcgctcctcgccgtccgggcgccgcgcagcc
gcccggcggcgcggcgcggccgccctcgcgcgccggctcgggctcgtcatggtgggaccg
gaggcgctgtcgtggtcccgccggcgctcggggcgcggcttcgtctacctcgacggcgaa
gggcggccgatccgcgatcccgccgtgaaggcgcgcctcgtcgccctcgcggtgccgccg
gcctacgtggcggtcggctacgcccccgacccgaacgcgcacctgcaggcgatcggccgc
gacgccgaaggacggcagcagtaccgctaccacgcgctgtgggaggaggtgcgcgagcgc
ctgaaggccgaccggctcgcccggctcgccaccgcgctgccgcggatccgccgccggatc
gtccgcgacctcgcagccgcgcccggcgagcgccggctggcgctggcggcggtcgtggaa
ctggtcacccagaccgcgatccggccgggcggcgagagctacgcccgcgagcacggcacc
cgtggggcggcgacgctgctgaagtccgacctccgccgcgtcggcgggcgggtcgaattg
cggttccgcgccaagggcgacaaggcggtggtctgtccggtgaccgacgaccgcctcgcc
ggggtgctagcggcgctcgccgaactgccggggcggcggctgttccaatatcgcggcgag
gacgggacgccgcggccggtcgcgtcgggagaggtcaacgcctacctgcgggagatcgcc
ggcacggcggtgtccttgaaggatttccggacgctggtcgcctcggccggcgtgctccac
gcgctcgcgggcgtcgaaccggagaccagcgagcgccggcgcaacgcccaggttgcgaag
gcgatccgcgaggcggcggaggtgctgcgcaacacgccggcgatctgccggcgcagctac
ttgctgcccgccgtggtgcgcgccttcgaggacggcacgctcgcccgcttcgccagacgg
ctgaagcgctgccggtcggccgtgcggcgcgccgaggtgctggccgggctgatccggcac
gcccggcaccacgatcggccgcccgagccgccgcgcgccgccaaatccgcgacgcgcggc
cggcggagggggccggccgggtcgggtgcatag
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