Pleomorphomonas sp. SM30: OHA_1_02068
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Entry
OHA_1_02068 CDS
T05766
Symbol
rhlE_3
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pleo
Pleomorphomonas sp. SM30
Pathway
pleo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pleo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OHA_1_02068 (rhlE_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pleo03019
]
OHA_1_02068 (rhlE_3)
Enzymes [BR:
pleo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OHA_1_02068 (rhlE_3)
Messenger RNA biogenesis [BR:
pleo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OHA_1_02068 (rhlE_3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BBE72473
LinkDB
All DBs
Position
1:2234586..2236154
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AA seq
522 aa
AA seq
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MTSFNELGLAESLLKALSKEGYETPTPIQTQSIPKLLEGRDLLGIAQTGTGKTAAFALPI
LQRLAPGEIARPRRVRALILSPTRELATQIAESFRAYGHFMNHMSVATIFGGVSHRPQEE
RLRRGVDILVATPGRLIDHLDTKALSLETTEVFVLDEADQMLDMGFVHAVRRIMKTLPSA
RQTLLFSATMPKEIGQLAGDLLTDPVTVKVTPVATTAERVEQRVIHVDTAAKRTLLRDVL
VEEKPERCLVFTRTKHGADRVVRSLAMDGIAAVAIHGNKSQAQRERALAGFKDGKTPILI
ATDIAARGIDVSGVSHVVNFDLPNIPESYVHRIGRTARAGASGVAISFCDHEERAYLKDI
EKLTRQQIPSEDRRGKIELRHMPRQDQVEVDEDGEEIRDERPARGARGGRPGGRSGGGRG
HGQPGGRAGGPAGGERRGGGNAGGGERRSAGHGGHGPAKADGAKPRGERRPAGGGTPAHG
SGKPNHRDNGAAEASLGRVGFLASPGRPAAGESRGPRRGGRG
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
ttgacgtccttcaacgaactcggcctcgccgaaagcctcctcaaggccctctccaaggaa
ggctacgagaccccgaccccgattcagacccagtcgatcccgaagctcctggaaggccgc
gacctgctcggcatcgcccagaccggcaccggcaagaccgccgccttcgcgctgccgatc
ctgcagcgcctcgcccccggcgagatcgcccgcccgcgccgcgtccgcgcgctgatcctg
tcgccgacccgcgagctcgcgacccagatcgccgagagcttccgcgcctacggccacttc
atgaaccacatgtcggtggccaccatcttcggcggcgtcagccaccggccgcaggaggag
cgtctgcgccgcggcgtcgacatcctcgtcgccaccccgggccgcctgatcgaccatctc
gacaccaaggcgctgtcgctcgagaccaccgaggtcttcgtgctcgacgaggccgaccag
atgctcgacatgggcttcgtgcacgcggtgcgccgcatcatgaagacgctgccgtcggcc
cggcagaccttgctgttctccgccaccatgccgaaggagatcggccagctggccggcgac
ctcctgaccgatccggtcacggtcaaggtgacgccggtcgccaccacggccgagcgcgtc
gagcagcgcgtcatccacgtcgacaccgccgccaagcgcaccctgctgcgcgacgtgctg
gtcgaggagaagccggagcgctgcctcgtcttcacccgcaccaagcacggcgccgaccgc
gtcgtccgctcgctcgccatggacggcatcgccgccgtcgcgatccacggcaacaagagc
caggcccagcgcgagcgcgccctcgccggcttcaaggacggcaagacgccgatcctgatc
gccaccgacatcgccgcccgcggcatcgacgtgtcgggcgtcagccacgtcgtcaacttc
gacctgccgaacatccccgagagctacgtccaccgcatcggccgcaccgcgcgcgccggc
gccagcggcgtcgccatctccttctgcgaccacgaggagcgggcctacctcaaggacatc
gagaagctgacccgtcagcagatcccgtccgaggaccgccgcggcaagatcgaactgcgc
cacatgccccgtcaggaccaggtcgaggtcgacgaggacggcgaggagatccgtgacgag
cgtcccgcccgcggcgcgcgcggcggccgtcccggcggccgctccggcggcggacgcggc
cacggccagcccggcggtcgcgccggcggcccggccggcggcgagcgtcgtggcggcggc
aacgccggcggcggcgagcgccggtcggcgggccacggcggtcacggcccggccaaggcc
gacggcgccaagccgcgcggcgagcgccgccccgccggcggcggcacccccgcccacggc
tccggcaagcccaaccaccgcgacaacggcgccgccgaggcgagcctcggccgcgtcggc
ttcctcgcctcgcccggccgtccggccgccggcgagtcgcgcggcccccgtcgcggcggc
cgcggctga
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