Pleomorphomonas sp. SM30: OHA_1_02957
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Entry
OHA_1_02957 CDS
T05766
Name
(GenBank) PD-(D/E)XK nuclease superfamily protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
pleo
Pleomorphomonas sp. SM30
Brite
KEGG Orthology (KO) [BR:
pleo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pleo03400
]
OHA_1_02957
Enzymes [BR:
pleo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OHA_1_02957
DNA repair and recombination proteins [BR:
pleo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
OHA_1_02957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
BBE73347
LinkDB
All DBs
Position
1:complement(3241702..3244827)
Genome browser
AA seq
1041 aa
AA seq
DB search
MTRPARVFTVPPAAPFLPTLSRALVEGVLVPGLDVRADPMALAAVTVYLPTRRAARALAG
ALSDALGGGTVILPRILPLGDVDDDPVDAVADPVGLDLPPTIPPAERLVGLARLVSDWRR
HVTADRLLTPSGQPIAVPTSAAEALHLAADLLALVDQAAAEGVDWALLRTLVPDDHAAWW
QLTATFLEIATTAWPAHLAERGAIDPIDRRSRMTRAIAARYDAAGSRGPVIAAGSTGSVP
ATATLLAAIARLPRGAVVLPGLDLDLDDATFADLTPDGGPGVPSHPQGAMARLLATIGIG
RDEVRTLGTISAPAAARARIVSEALRPAETTERWPAVVAGLDADAAGTAAALDGLALVEA
ANEAEEALAVAVALRETLETPGATAALVTPDRGLARRVAAELRRFGVEAEDSAGEPLART
RLGVLALLVAEVVAEGAPPEKVVALVKHPLVRFGLPPDRLAAAARALEVAVLRGPRLAAG
VRPLVAAADVLCRAGRSGLGVHPAVARLDAAAAADGRRLAQRLGDALSPLEDLGSRPVDL
RVLVGAGLAALRAAARDESGSDEALFAGPAGSAFAGLMVEHLDARGDGLAVSPAEWPGVL
SALMTGRLVRRPAPTARIAILGPLEARLLAFDRLVLGGLEEGVWPLATDTGPWLSRPMRA
ALAFSPPEVRIGLSAHDFTQSLGGRDVVLTRSVKREGAPTVATRFLQRLTGLIGETRTGV
LAAAGRRFVAIARRLDDRPAEDRADRPQPKPPVTARPVSLSVTEIETWIRDPYAIYARRI
LRLEPLPALGERPHFGTRGSALHDIFARFALEWTGRPFDDAAVARLVAIGREVFDREFGA
YPEIHALWWPRFVAAADFVVRDFEAGRDAVERLPEVAGELKLPAGAGEFRLRGRADRVDV
RADGMLSIVDFKTGQAPTARQIATGNAPQLPLEGAIARRGGFPTLAAAPVADLTHVVLRG
IRGRDDVVVYAGYASKDLTLSLEETIDEAERRLAALVAAYADPDKGYLSRAHPYRSDDAG
PYDHLARVMEWSIGADGEDGE
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgacgcggccggcgcgcgtcttcaccgtcccgcccgcggcccccttcctgccgacgctg
tcgcgtgccctggtcgagggcgtgctggttcccggcctcgacgtccgtgccgatccgatg
gcgctcgcggccgtcaccgtctacctgccgacccgccgcgccgcccgggccctcgccggc
gcgctgtcggacgcgctcggcggcggcaccgtgatcctgccgcgcatcctgccgctcggc
gacgtcgacgacgacccggtcgacgccgtcgccgaccccgtcggcctcgacctgccgccg
accattccgccggccgagcggctggtcggcctcgcccggctggtctccgactggcgccgc
cacgtcaccgccgaccgcctgctcaccccgtcgggccaaccgatcgcggtgccgacctcg
gcggccgaggcgctgcacctcgccgccgacctgctcgcgctcgtcgatcaggccgccgcc
gaaggcgtcgactgggcgctcctgaggacgctggtccccgacgaccacgccgcctggtgg
cagctcaccgccaccttcctcgagatcgccaccaccgcctggccggcccatctcgccgag
cgcggcgcgatcgatccgatcgaccgccgcagccgcatgacccgcgccatcgccgcccgc
tacgacgccgccggctcgcgcggccctgtgatcgccgccggctcgaccggctcggtgccg
gcgacggcgacgctgctcgccgcgatcgcccggctgccgcgcggcgccgtcgtgctgccc
ggcctcgatctcgacctcgacgacgccaccttcgccgacctgacgcccgacggcggtccc
ggcgtgccgagccatccccagggcgcgatggcgcgcctcctcgccaccatcggcatcggc
cgcgacgaggtccggacgctcggcacgatctccgcgcctgccgccgcccgcgcccggatc
gtctccgaggcgctgcgtccggccgagaccaccgagcgctggccggccgtggtcgccggc
ctcgacgccgatgcggccggtaccgccgccgctctcgacggcctcgccctggtcgaggcc
gccaacgaagccgaggaggcgctcgccgtcgcggtcgcgctgcgcgagacgctggagacc
ccgggcgccaccgccgccttggtcacccccgaccgcggcctcgcccgccgggtcgccgcc
gagctccgccgtttcggcgtcgaggccgaggacagcgccggcgagccgctcgcccgcacc
cgcctcggcgtgctcgcgctgctggtcgccgaggtggtcgccgagggggcgccgccggag
aaggtggtggcgctggtcaagcacccgctcgtccgcttcggcctgccgccggaccgcctc
gccgccgccgcccgcgcgctcgaggtcgcggtgctgcgcggtccccggctcgccgcgggc
gtccggccgctcgtcgcggcggcggacgtgctgtgccgcgccggccgctccggcctcggc
gtccacccggcggtcgcccggctcgacgccgccgcggccgccgacggccgccggctcgcc
caacgcctcggcgacgccctgtcgccgctggaggacctcggcagccggccggtcgacctg
cgggtgctcgtcggcgccggcctcgccgcgctgcgcgccgccgcccgcgacgaatcgggc
tccgacgaggcgctgttcgcgggccccgccggctccgccttcgccgggttgatggtcgag
catctcgacgcccgcggcgacggcctcgcggtctcgcccgccgaatggccgggcgtgctt
tccgcgctcatgaccggccggctggtccgccggccggccccgaccgcccggatcgccatc
ctcggcccgctcgaggcccgcctcctcgccttcgaccggctcgtgctcggcggcctcgag
gagggcgtctggccgctcgccaccgacaccgggccgtggctgtcgcggccgatgcgcgcg
gcgctggccttctcgccgccggaggtccgcatcggcctctcggcccacgacttcacccag
agcctcggcggccgcgacgtggtgctgacccgctcggtcaagcgcgagggtgcgccgacg
gtggcgacgcgcttcctgcagcgcctgaccggcctgatcggcgagacgcggaccggcgtg
ctcgccgcggccggccgccgtttcgtcgcaatcgcccgccggctcgacgaccgtccggcc
gaggaccgcgcggaccggccccagccgaagccgcccgtcacggcgcggccggtgtcgctg
tcggtcaccgagatcgaaacctggatccgcgacccctacgccatctacgcccgccgcatc
ctgcgcctcgagccgctgccggcgcttggcgaacgcccgcatttcggcacccgcggctcg
gcgctgcacgacatcttcgcccgcttcgcgctcgagtggaccggccgcccgttcgacgac
gccgcggtggcccggctggttgcgatcggccgcgaggtgttcgaccgcgagttcggcgcc
taccccgagatccacgccctgtggtggccgcgcttcgtcgccgccgcggacttcgtcgtg
cgggacttcgaggccggccgcgacgcggtcgagcgcctccccgaggtggcgggggagctg
aaactgccggccggcgcgggcgaattccgcctgcgcgggcgggccgaccgcgtcgacgtc
cgcgccgacggcatgctgtcgatcgtcgacttcaagaccggtcaggccccgaccgcccgc
cagatcgccaccggcaacgccccgcagctgccgctcgaaggcgcgatcgcccggcgcggc
ggcttcccgaccctcgcagccgcgccggtcgccgacctaacccacgtggtgctgcgcggc
atccgcggccgcgacgacgtcgtggtctacgccggctacgcctcgaaggacctgacgctg
agcctcgaggaaaccatcgacgaggccgagcgccgcctcgccgccctggtcgccgcctac
gccgacccggacaagggttatctctcgcgcgcccatccttaccgcagcgacgacgccggc
ccctacgaccacctcgcccgggtgatggaatggtcgatcggcgccgacggggaggacggc
gaatga
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