Pleomorphomonas sp. SM30: OHA_1_03311
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Entry
OHA_1_03311 CDS
T05766
Symbol
rnd_2
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pleo
Pleomorphomonas sp. SM30
Brite
KEGG Orthology (KO) [BR:
pleo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pleo03016
]
OHA_1_03311 (rnd_2)
Enzymes [BR:
pleo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
OHA_1_03311 (rnd_2)
Transfer RNA biogenesis [BR:
pleo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
OHA_1_03311 (rnd_2)
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
BBE73697
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All DBs
Position
1:complement(3616734..3617348)
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AA seq
204 aa
AA seq
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MTIRTHVGDLPDLDRYGAVVAVDTETLGLQPHRDRLCVVQLSPGDGSADVVQIRKGQREA
PNLVRLLSDPDRVKIFHYARFDLAVLFQTFGVTVAPVFCTKIASKLTRTYTDRHGLKDVT
RELLGIEISKQQQSSDWGAAELTQAQLDYAASDVLNLHALRERLTVLLEREDRAGFADAC
FRFLPTRARLDLLGWGEEDIFAHT
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgaccatccgcacccatgtcggcgacctccccgatctcgaccgctacggcgcggtcgtc
gcggtggacaccgagaccctcggcctgcagccccaccgcgaccgcctctgcgtcgtccag
ctctcgcccggcgacggctcggccgacgtggtgcagatccgcaagggccagcgcgaggcg
ccgaacctcgtccgcctgctgtcggacccggaccgggtcaagatcttccactacgcccgc
ttcgacctcgcggtgctgttccagaccttcggcgtcacggtcgccccggtgttctgcacc
aagatcgcctcgaagctgacgcggacctacaccgaccgccacggcctcaaggacgtcacc
cgcgagctgctcggcatcgagatctccaagcagcagcagtcgtccgactggggcgccgcc
gagctgacccaggcccagctcgactacgccgcctcggacgtgctcaacctccacgccctg
cgcgagcggctgacggtgctgctcgagcgcgaggaccgcgccggcttcgccgacgcctgc
ttccgcttcctgccgacccgcgcccgtctcgacctgctcggctggggcgaggaggacatc
ttcgcgcacacctga
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