Plectropomus leopardus (leopard coralgrouper): 121941671
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Entry
121941671 CDS
T07454
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
121941671 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plep04121
]
121941671 (slx4)
03400 DNA repair and recombination proteins [BR:
plep03400
]
121941671 (slx4)
Ubiquitin system [BR:
plep04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
121941671 (slx4)
DNA repair and recombination proteins [BR:
plep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
121941671 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BTB
zf-met
zf-C2H2
zf-C2H2_jaz
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
121941671
NCBI-ProteinID:
XP_042340431
LinkDB
All DBs
Position
4:23595171..23609346
Genome browser
AA seq
1528 aa
AA seq
DB search
MDDSDQDFVDLCSKLLKRVRKKPGESRQPRRAERQASSQASDGDKRVRNNKRDGDCGSQP
VCTGAEELVLCGKTGHESGDAESSVVASSSSSASSSSSSSAAAAAAAGQRAERGLSAKDK
VLHRMQQFRRASPQKMMHKDKSQPANQEIDPPPPLTKRQDTPDSFGSDLHTEPQNSDEAL
ALCLQQELDREAAGAQSVELEDGGLFLCQICHRDLSHMTPNGRTQHLNRCLDESEESAPV
PPPPPPGVPDCPICGKKFKSQKSRSAHLKRCSSEMGVAPAVLLQALQRQTEETQNVPAAT
TVSQTGGTKRKGPSKPGLPAKKKPRKKTPPLDEDTMVALALSSSLLEQEQQSEGERQLQT
AAAHTSMTPALTWRPDAGKGRGKRKKGTIPRPPPLLLVQDAEVALARLQERVSALLLRSP
APSPPTPTRGPSSLPGWSGAAPLWQKSRLLDGSSTCLSDFYTPELREFITPWEAATTDAA
TSSTVSKPESSVQPASEGTPVSGTPVSGTRASILPSSSQTASSTPGTGRALLMDLMELAE
DGVTLTQYAHSTSGPDKDKSASQNTNLCLSGFVPEESEEQADLCVSGFLPETTHTHAEDA
GSRARRTTHQPGADKDRGSHQLVALSRLASDLSTMVNNPQLSDLQLQVDTGEVYFAHSFM
VYARCPLLAEMVHESGFGVQEEGMPAAQRVLMNDVPGQAVFALLQYLYTARCSIPASLQP
HVLELASRFDLQELRQLCELHREDAAARGDEEDDMNQEENVNNQTDQALTVLLRSMWGEE
EDDDEVGMDTDGGRVEERELEGDDQADDLVSGDGEIREEKVNEEELEEIYEFAATQRKRE
EEKYSMEEEEEREKVDVEEEGEKFTKRNSTCFGVKSLQPNSQLDRSYSRLFSDSWGVYEE
EEPSSSPSTSGPAKVHTPKPQQHQSPHKPSSELSGRTLLQSSESVVDDLSLSHTPSASNL
PIPGQSPGHAGDWGDAGGKETDVSKQEGPQSICVPLSPDLSQEKKEPELIVLSDSSEGTE
VILSSRSPSPSSPFAVQKPQSYTKIKPQTILKPDEPTLEEKQFSSVELTPDDPSAAPVQS
RLGPWCDQDPVDCSPEVSWLIPSTPVQPGRSTTTSSSQTKSSMCRTQLFPKGDASSSSVF
SSPSLPFNNRLKTSTSPTRVSAHSGSTQDSVPKLKLDETRGSSSDLNFNSKSTSSCDVSK
DGGVFAVHPKLSTSTTSRQDIPLNGQPQPYSSTPLHTDVHKAPVLLATTPLPTSPDKQRT
TSRGRDRVRSESLEKTELGSFHLSPLSDPSDPPSSSPHRGLQRSQRHSESSSERRRSVES
SSHNSTELKRRGLRNEEGEGEREQEEAGEAEVAESSFQQSFLAMDEPPIAFNDSWGFDAC
ADFEANPGCFSLRLEDSGPSSQQGKRSLVQETASSNLCPTSPPGHSVHLLNSHGGATASS
PSRVYSTRPSTSVQAHSGLSVTPSRPGPPTRTPPEISSRLLDSNIWDSWEEEEEVALPLS
QRVNPSAQLKTPGKSLTAHVIFFNILKE
NT seq
4587 nt
NT seq
+upstream
nt +downstream
nt
atggatgactcggaccaggattttgtagatctgtgctcgaagctgctaaaacgagtccgc
aagaaaccgggtgagtccagacagccgaggagagcagagcgtcaggcctccagtcaggcg
agcgatggagacaagagggtgagaaataacaagagagatggtgactgtgggtcccagcct
gtttgtactggtgcagaggagcttgtgctctgtgggaaaactggacatgagtcaggagat
gctgagtcgtcagttgtggcatcatcatcatcatcagcatcatcatcatcatcatcatca
gcagcagcagcagcagcagcaggacagagagctgagagaggtttgtcggcaaaagacaaa
gtactccaccggatgcaacagttcaggagagccagcccacagaagatgatgcacaaggac
aaaagccagccagcaaaccaggagatcgatcctcctccccctctgacaaaaagacaagat
actccagactctttcggctcagatctccacacggagccccagaacagcgatgaggctctg
gccctatgtctgcagcaggagctggacagggaggcggcaggggcccagtcagtggagctg
gaggacggagggctcttcctctgtcagatctgccacagagatctctcacacatgacacct
aatgggcgaacacagcatctcaacaggtgtttggatgagagcgaagagagcgccccagtc
ccccctccaccgcctcctggtgttcccgactgtcccatctgtggcaagaagttcaagtct
cagaagagtcgctcggcccacctgaagcgctgctcctcagaaatgggtgttgctccggct
gtgctgctgcaggctctgcagagacagactgaggagacccagaatgtccccgctgctacc
acagtctcacagactggtggcactaaaagaaaaggcccatccaaaccgggcctccctgca
aagaagaagcccaggaagaagaccccacccctggacgaggacaccatggtggccctggct
ctgtcctcctctctgctggaacaggaacagcagagcgagggggagaggcagttacaaact
gcggccgctcacacgtccatgacaccagcgttgacgtggaggccagacgcaggtaagggg
cgtggaaagagaaaaaagggcaccattcctcgccctcctccgctcctcctcgttcaggat
gccgaagtggctttggcgaggctgcaggaacgtgtttctgctctcctcctacgcagcccg
gccccctcgccccccaccccgacccgcggccccagtagtctgccgggctggagcggtgct
gcccccctctggcagaagagcaggctgctggacggaagctccacctgtctgtctgatttc
tacaccccggagcttagagagttcatcacaccctgggaggcagcgacgactgatgcagcc
acctccagcaccgtcagcaagcctgagtcttctgtccaacctgcgagtgagggaactcct
gtctcagggacacctgtttcagggaccagggcctccatcctgccatcctcctctcagacg
gcctcctctaccccggggacaggccgggcactcctgatggacctgatggagctggctgag
gatggcgtgaccctcacccagtatgctcacagtacttcaggcccagacaaagacaagagc
gctagtcagaacacaaacctttgtctgagcggcttcgtccccgaggagtcggaggagcag
gctgacctctgtgtgagcggcttcctaccagaaacaacccacacacatgcagaggacgct
ggcagccgagcgaggaggacgactcatcagccaggcgcagataaagatcgaggcagccac
caattagtggcgctgtccaggctggcatcagacctgagcaccatggtgaacaaccctcag
ctcagtgacctgcagctccaggtggacactggagaagtctactttgctcactccttcatg
gtgtacgctcgatgccccctgctggcagaaatggttcatgaaagtggtttcggggtgcag
gaggagggcatgcctgcagctcagagggtgctgatgaatgacgttcccggtcaggcggtg
tttgctttgctgcagtatctctacacagcccgctgctccatcccagcatcacttcagcct
catgtgctggagcttgcatccaggtttgacctgcaggagctacggcagctttgcgagctc
catcgagaggatgcagcggcacgcggagatgaggaagacgacatgaaccaggaggaaaat
gtcaacaaccagacagaccaggccctcacggtgctgctccgctccatgtggggggaggag
gaggatgatgatgaagtgggaatggatacagatggaggaagggtcgaagagagagaattg
gaaggagatgatcaagccgacgacctcgtgtcaggcgacggagagatacgtgaggagaag
gtgaatgaggaagagttggaagagatctacgagtttgccgccacgcagagaaagagggag
gaggagaaatacagcatggaggaggaggaggagagggagaaggtagatgtggaggaagag
ggagaaaaattcaccaaaagaaactcaacatgcttcggtgtaaagtccctgcagccaaac
tctcaactggaccgcagttacagccgcctcttctctgactcctggggagtctacgaggaa
gaggagccttcgtcctcaccctccacttctggcccagctaaggtacacacccctaaaccc
caacaacaccagtccccccataaaccctcatctgaactgtccggcagaactttgcttcag
tcctcagagagcgtagttgatgacctttctctcagccatacacccagtgcatccaacctg
ccgatcccgggtcagtcccccggtcacgcgggtgactggggtgacgctggaggcaaggaa
acagatgtttcaaagcaagaaggtcctcaaagtatttgtgtccctctgtctcctgattta
tctcaggaaaaaaaggaacctgagctcatagttttgtcagattcaagtgaggggacggag
gtaattcttagttcccgcagtccttcgccaagttctccatttgccgtccagaagccgcag
agctacaccaaaatcaaacctcagacaatcctgaaacctgatgaacccaccttggaggaa
aaacagttcagtagtgtagagcttactcctgatgatccgtctgcagcgccggttcaaagt
cgtctcggtccgtggtgtgaccaggatccagtagactgttccccagaagtttcttggctg
atcccctccacaccggtccagcccggaagaagcaccacgacaagctcctctcagactaaa
agcagcatgtgcaggacacagctgttccctaaaggtgacgcctcctcctcctctgttttc
tcctctccttctttaccttttaacaacagactgaagacctccaccagtccaaccagagtc
tctgcccactctggctcaacacaggacagtgttcctaaattaaaactggacgagacccgt
ggctccagctcggatctcaactttaactccaaaagtacaagtagttgtgatgtgagtaaa
gacggaggagtgtttgcagttcatcctaaactctcaacctcgactacctcaagacaggat
atacctctgaacggccagccgcagccttacagcagcactcccctccacacagacgtccac
aaggcccccgttcttcttgccaccacgccgctccccactagccctgataagcagaggacg
acgagtcgaggaagggacagggtgcggtctgaaagcctggagaagacagagttagggagc
tttcatctctctccactgtctgacccttcagatccaccctcgtcttcccctcacaggggt
cttcaacgttcacagcggcacagcgagtcctccagtgaaaggcgacgctccgttgagtcc
agcagtcacaacagcacagagctcaagaggaggggattaagaaatgaggaaggagaagga
gagagggagcaggaagaagctggagaggcagaagtcgctgaatccagtttccagcagagc
ttcttggccatggacgagcctcccatagctttcaacgactcatggggtttcgatgcctgt
gcagacttcgaggcaaacccaggctgcttcagtctgaggctggaggacagcggaccatcc
agccagcaaggcaagcgcagcctggttcaagagacagcctcttctaacctttgtccaact
tcaccacccggtcacagcgtccatctgttgaacagccacggcggtgcgaccgcctcctct
ccgtccagagtctacagcacacggccgtcaaccagcgtacaggctcattcaggactctcc
gtcactccctcacgacctgggcctcccacccggaccccaccagagatcagcagccgcctc
ctggactccaatatatgggacagctgggaggaggaagaggaggtggctcttcctctctca
cagcgggttaacccttcagcacagctcaaaaccccaggtaagtctctcactgcacacgtg
attttctttaacatactaaaagaatga
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integrated database retrieval system
