Plectropomus leopardus (leopard coralgrouper): 121941818
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Entry
121941818 CDS
T07454
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121941818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plep03041
]
121941818
03009 Ribosome biogenesis [BR:
plep03009
]
121941818
Enzymes [BR:
plep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121941818
Spliceosome [BR:
plep03041
]
Complex A
U2 snRNP components
U2 related factors
121941818
Complex B
121941818
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
121941818
Ribosome biogenesis [BR:
plep03009
]
Eukaryotic type
90S particles
Helicases
121941818
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Cas3-like_C_2
Flavi_DEAD
AAA_29
nSTAND3
Atrophin-1
nSTAND_NTPase5
AAA_7
RSB_motif
Motif
Other DBs
NCBI-GeneID:
121941818
NCBI-ProteinID:
XP_042340633
LinkDB
All DBs
Position
4:12232588..12242431
Genome browser
AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSEGRDRDRDRDREDRSRDRDRDRDRDRDRDRDRDSKPATVP
SNSTAPAPCLAPIKQMAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKESFSDIITRH
QSFVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRPDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYTNIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYEMSNFPQCEAKRQLERIIAKLESKEYSQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacatcgcctggatttgggggatgactactcttcctctaagaagaggtct
gaagggagagaccgggaccgtgacagagaccgtgaggaccgctccagggacagggaccga
gatagggaccgggacagggacagagaccgggacagagactcgaagcctgctactgtccca
tctaacagcacggcgcctgcaccatgcctggcacccatcaagcagatggctatgcaacag
cagatcaacccgttcaccaacctgccgcacacgccgcgctactacgagatcctgaagaag
aggttacagcttccggtatgggagtacaaggaaagcttcagcgatatcatcacacgtcat
cagagcttcgtccttgttggagaaactggctctgggaagacaacacagatcccacagtgg
tgtgtggacatggtgaggggcttgcctgggcctaagcgggcagtagcctgtactcagccc
aggagagtggcagctatgagtgtagctcaaagggtggcagacgaaatggacgtcatgctt
ggacaggaagtcggctactccatccgatttgaagactgcagctcagctaagactatactc
aagtacatgacagatggtatgttactaagagaggctatgaatgacccgctgttggagcga
tatggtgtgatcattctggacgaggcccacgagagaactctggccacagatatcctgatg
ggagtactcaaggaggtggtgcgtcaaagaccagatctgaaggtgatcgtgatgagtgcc
acgctagatgccggaaagttccaagtgtactttgacaactgtcctctcctgactattccc
gggcgtactcaccctgtagagattttctacactcctgaaccagagcgggactatcttgag
gcagcgatccgcaccgtcatccagattcatatgtgtgaggaagatgaaggcgactgcctc
ctctttctcacaggtcaagaggaaattgatgaggcctgcaaacggatcaagcgtgaagta
gatgaccttggacctgaagtcggagacatcaaaatcattccactgtattccacattgcca
ccacagcagcagcaaaggatctttgagcctcctcctccaagaaagcccaatggtgcaata
ggaagaaaggttgtggtttcaacaaacattgctgagacctctttgacaattgatggtgtg
gtgtttgtcatcgatcctggatttgctaagcaaaaggtttataatccccgtatcagagtg
gagtctttgctcgtcacagccatcagtaaagcttctgcccagcagagggcgggacgagcc
ggcagaacacgtccagggaaatgtttccgcctctacacagagaaggcctacaaaacagag
atgcaggataacacctatcctgagattcttcgatccaacttgggatctgtggtgctgcag
ctgaaaaagctgggtattgatgatcttgtgcactttgacttcatggatccaccagctcca
gagacactgatgagggcccttgagctgctgaattacctggctgctctgaatgatgacggt
gatctgacggagctgggctccatgatggcagagtttcctttggacccccagctggctaag
atggtcattgccagttgcgagttcaactgctctaacgagatcctttccattactgccatg
ctgtcagtcccacagtgttttgtccgccccacggaggctaagaaggcagcagacgagtcc
aagatgaggtttgctcatatcgacggagaccacttgacgctgctcaacgtctaccacgcc
ttcaaacaaaaccacgagtctaaccagtggtgctatgacaactttgtcaactaccgctct
ttgatgtctgctgacaacgtgcggcagcagctgtccaggatcatggaccgctttaacctg
ccgcgcaggagcacagagttcaccagcagagattactacacgaacatccgccgagcgctc
tgcaccggcttcttcatgcaggtggcccatttggagcgcacaggtcattacctcacagtc
aaagacaaccaagtggtccaactgcacccatctacagtcctggaccacaaaccagagtgg
gtgctctacaatgaatttgtcctcaccaccaaaaactacatccgcacttgcacagacatc
aaaccagagtggctggtgaagattgcaccgcagtactatgaaatgagtaacttcccacaa
tgtgaagctaaaagacagctggagcgaatcattgccaaactagagagcaaggagtattcc
cagtactaa
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