Plectropomus leopardus (leopard coralgrouper): 121941926
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Entry
121941926 CDS
T07454
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03030
DNA replication
plep03410
Base excision repair
plep03420
Nucleotide excision repair
plep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121941926 (rfc1)
03410 Base excision repair
121941926 (rfc1)
03420 Nucleotide excision repair
121941926 (rfc1)
03430 Mismatch repair
121941926 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plep03032
]
121941926 (rfc1)
03400 DNA repair and recombination proteins [BR:
plep03400
]
121941926 (rfc1)
DNA replication proteins [BR:
plep03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121941926 (rfc1)
DNA repair and recombination proteins [BR:
plep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121941926 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
PTCB-BRCT
AAA_30
AAA_5
Rad17
RuvB_N
AAA_14
AAA_17
BRCT_2
AAA_7
AAA_33
AAA_16
NTPase_1
AAA_18
nSTAND3
RNA_helicase
AAA_19
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
121941926
NCBI-ProteinID:
XP_042340870
LinkDB
All DBs
Position
4:33623456..33644541
Genome browser
AA seq
1185 aa
AA seq
DB search
MDIRRFFAPTSGKPAVQKPASNGTTKTEEKKKKKNPLSPDEEVKKKKKEATKVKSYKPEE
KRSDSEKKRKKRAVIESDSEDEEPVSKSKKSPKEKQKTGKTEPPPKKDPVQYVSETDSDS
DNFQSLKKASNPKQNGSDRQKPGATEGHKSPFRPSTTQGKTAVKSPPAPVTPKSAPPPQP
KKTPTSVFDYFGSASVQRSDKKLVASTKRKAPTQDRDDQMSDEEIAKQLQMDEDMELEKQ
IHEDEEFARTLALLDEEPQAKKARKSSDENPAATTIPKKSTAVSAAGSKSSPSKTNPRKS
ISEDVISPSPKKFPTPVKASSKLAIMKKKEEERDEGPKGKTPISPAKIKISPKKEPIASA
SIDKNLTPKTGTTPITVKTSPKKPEMSKSTSTSPDDAEKKKINSSAYRNYLNRDGPRALG
SKEIPQGEENCLEGCVFVLTGVLESIERDDAKSLIERYGGKVTGNISKKTTYLVQGRDSG
VSKLEKAESLGTKILDEDGLLELIRTKPGKKSKYEIAAEAENKSSKTRTPPSKPSKSTPQ
SQKISPSKGNSRSPHTPSPSKTGLAQGHAARNGDGGTPPGRGSGHTARRGLGLSSSTSSS
SPPGPSSPSGGDASLLWVDKYRPNSLKTVIGQQGDQSCANKLLRWLQNWHKHHSGGTSKP
PAVARFGKFGGGKDDGSGYKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNS
LKEVVAESLNNTSIENFYKGTSQKVSSKHVLIMDEIDGMAGNEDRGGIQEMIGLIKNSKI
PIICMCNDRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSIAFKEGIKIPPPALNEIILA
SNQDVRQVIHNLSMWSAKDKVMTYDQCKSDAASARKDMKLGPFDVCRKVFASGEETAHMS
LIDKSDLFFHDYSLAPLFVQENYLHVRPKAAGGDLKSHLMLLSKTADSICEGDLVDRRIR
SGQNWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKNSSTSKHARIVQELASHMGLK
TMSSRQAVNLDYLHYLRQALLNPLQRHGAEGANEAVQLLDDYQLIKEDVDSIMEISVWGG
QPDPYSKLDSKVKAAFTRAYNKEVHLTPYSLQAVKKGRRGGGAGESEPGGEDIDNEEQES
EDEGLKTDAMIKQKKAKVTKETKKEKKEDSGKDKGKGKGKGKAKK
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccgacatcaggcaagcctgcagtgcagaaaccagct
tcaaatggaaccactaaaacagaggagaagaagaagaagaagaatcctctctctccagac
gaggaagtgaaaaagaaaaagaaagaggccaccaaggtgaaaagctacaaaccagaggag
aaacgcagtgacagtgagaaaaaacgaaaaaagcgtgcagtcatagaatcagactctgag
gatgaggagccagtgagcaaatcaaagaaatcccccaaagagaaacagaagacgggcaaa
acagagccacctcccaaaaaagatcctgtgcagtatgtctctgaaacagactcagacagc
gacaactttcagtccttgaaaaaggcctccaaccccaagcagaatggctcggacagacag
aagccaggagccacagagggccataagtctcctttcaggccctccaccacacaggggaaa
actgctgtgaagtctcctcctgcgcccgtcacccctaaatcagccccgcctcctcagccc
aaaaaaactcccacctcagtattcgattacttcggcagtgcgtctgttcagcgttcagac
aagaagctggtagccagcaccaaacgaaaggcgccgactcaggacagagatgatcagatg
agtgatgaggaaattgccaagcagctacagatggatgaggacatggagctggagaagcag
atccatgaggacgaggagtttgccagaactctggccctgctggacgaggagcctcaagcc
aagaaggctcgtaaaagctcagatgaaaacccagccgctaccacaatccccaaaaagagc
actgcagtctctgcagctggcagcaagagcagcccgtcaaagaccaacccaaggaaaagc
atatcggaggacgtgattagtccctctcctaaaaagttccccacccccgtcaaagccagc
tccaaactggccataatgaagaaaaaagaggaggagagagacgaggggccaaagggcaaa
acaccaatttcacctgcaaaaataaaaatctctcccaaaaaggagccgatcgcttcagca
agcattgataagaacctcactcccaaaacaggcaccacaccaatcacagttaaaacttct
cccaagaaaccagaaatgagcaagagcacaagtacgagtcctgacgatgcagagaagaag
aagatcaactcttcggcgtacaggaactacctcaacagagatggaccgcgagccctgggc
tccaaggaaatcccgcagggtgaggagaactgtttggagggctgtgtgtttgtgctgacg
ggcgtcttggagtccatcgaaagggatgatgccaaatccctcatcgagcgctacggtggc
aaagtgacgggcaacatcagcaagaagaccacgtacctggtgcaaggcagagacagcgga
gtctcgaagctcgagaaggcggagagtcttggtaccaagatcctggatgaggatggtctg
ttggagctgatcagaaccaaaccaggaaagaaatccaagtatgagattgctgcagaggct
gagaacaaatcctcaaagaccaggactccccccagcaagccatcaaagagcaccccccag
tcccagaagatctctccctccaagggtaattccaggtcccctcacacaccgagtccgtca
aagaccggactggcacaaggccacgcagccagaaacggagacggcggcacacctcctggg
agagggtcaggtcacacagcccggagggggctgggcctttcctcctccacttcttcatct
tcaccccccggaccatcatccccatcaggaggggatgcaagtctgctgtgggttgataag
taccgccccaactctctgaagactgttattggccagcagggagatcagagctgtgccaat
aagctgctgcgctggctgcagaactggcacaaacaccacagcggaggcacatccaaacca
ccagcagttgcaaggtttggtaagtttggaggagggaaagatgatggatcagggtacaaa
gctgctctgctctcaggacctccaggtgtggggaagaccaccacagctgccctggtctgt
gaggagttgggcttcagctacgtggagatgaacgccagctgtactcgcagcaaaaacagt
ctgaaagaagtcgtcgcagagtcactcaacaacaccagcatcgagaacttctacaaaggc
acatctcagaaagtgagcagtaaacacgtcctgatcatggatgagattgatggcatggct
ggcaacgaggaccgtggaggaatccaggagatgatcggcctgatcaaaaattcaaagatt
cccatcatctgcatgtgcaacgatcgcaaccaccagaagatcaggtcactggccaactac
tgcttcgatctgcgcttccagaggccacgagtggaacagatcaagggagccatgatgtcc
atcgctttcaaggagggaatcaagatcccgcccccagccctcaacgaaattatcctcgcc
tccaaccaggatgtccgacaggtgatccacaacctgagcatgtggtcggccaaagacaag
gtgatgacgtacgaccagtgcaagtctgacgcagccagcgcccgcaaggacatgaaactg
gggccgtttgatgtttgtagaaaggtgtttgcctccggggaggagaccgcccacatgagc
ctcatcgataagtccgacctcttcttccatgactattcgctggcgccgctctttgtccaa
gagaactacctgcacgttcggccaaaggctgccggcggggacctcaagtcccacctgatg
ttactcagcaagacagctgactccatctgtgaaggagacctggtggacagacggatccgc
tctgggcagaactggtccctgctgcccactcaggccatctatgccagtgtgttaccaggt
gagctgatgagaggctacatgagtcagttccccaccttccccagctggctcggcaagaac
tcctccaccagtaaacatgcccgcatcgtccaggagctggcctcacacatgggcttaaaa
acgatgagcagcagacaggcggtgaaccttgactacctgcactacctgcggcaggcgctg
ctcaacccacttcagaggcacggagcggagggcgccaacgaggccgtgcagctgctggac
gactaccagctcatcaaggaggacgtggacagcatcatggagatcagtgtctggggcgga
caaccggacccctactccaaactggactctaaggtgaaggcagcgttcacacgggcctac
aacaaagaagttcacctgacgccatattccctgcaagcggtgaagaagggccgacgtggt
ggcggcgcgggggagtctgagccgggaggagaggacattgacaacgaagagcaggagtct
gaggacgagggcctcaaaactgacgccatgatcaaacagaagaaggctaaagtaaccaag
gagacgaagaaggagaagaaggaggactctgggaaggacaaaggcaaggggaaaggcaaa
ggcaaggccaagaaatga
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