Plectropomus leopardus (leopard coralgrouper): 121942815
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Entry
121942815 CDS
T07454
Symbol
col4a3
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep04382
Cornified envelope formation
plep04510
Focal adhesion
plep04512
ECM-receptor interaction
plep04518
Integrin signaling
plep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121942815 (col4a3)
04518 Integrin signaling
121942815 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121942815 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121942815 (col4a3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121942815 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plep04147
]
121942815 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
plep00536
]
121942815 (col4a3)
Exosome [BR:
plep04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121942815 (col4a3)
Glycosaminoglycan binding proteins [BR:
plep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121942815 (col4a3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121942815
NCBI-ProteinID:
XP_042342016
LinkDB
All DBs
Position
5:49942..90867
Genome browser
AA seq
1663 aa
AA seq
DB search
MEAPGCPRRRIVPLLLLLLCCTAAPGRAERVCHCSGKSLCHCDGVKGQKGEPGYLGYDGL
PGVIGYPGNEGHQGSPGEKGEQGPAGSSGLKGSRGLPGKPGFPGPPGLPGLPGHEGPIGK
PGLPGCNGTKGDVGYPGYPGAPGPVGLQGRPGLRGAKGDSYIFPVTQDIKGAPGPRGPDG
ENGLSGDPGEPGLPGPPGSPGLPGSPGQSGLAGEKGQEGPSPVIPGPRGQRGDRGPPGIP
GQKGIKLYAEGPKELKGEPGEVGFKGCQGLPGVPGKVGVKGGKGGRGDPGSLGKPGKDGV
PGELGEPGEPGDRGYLGPPGIDGATGEKGERGFPGLPGEMVWKHIFLKGQPGVAGPXGPT
GVPGEQGLIGFPGLQGESGVGITGPPGPQGPPGSSGPKGEPGEPGPLIAGPPGKTGVPGG
PGVAGEPGEPGIPDFLPGDVGSPGAKGLKGPVGFPGIRGEEGRTGEKGELCSNCRVISGP
PGPPGKPGEPGEDGVPGSGGFPGPKGNKGVKGVTGPPGPQGPFGIPGLPGPPGPIGDPGI
MQRVGQKGEDGDLGEPGTPGFPGKDGARGLTGRRGVLGQKGNPGPPGSKGERGPLGETGP
RGLTGQMGPPGPPGIGAPGPPGPKGNVGVLGQRGDPGKPGEKGSPGEIRTSLGDPGQKGE
KGLAGNPGPEGVTGFPGAPGVVGPKGERGDVGFSIQGPPGFPGVKGLKGPLGAPGLPSFG
IKGRAGPSGPPGMPGPKGDNGIGFPGQQGQSGPQGEDGSVGLQGNPGPPGRDGAPGPPGQ
DGPPGPKGRRGLDGVPGPVGFVGLCLPGAPGPEGEQGQMGVIGFTGTRGPKGVRGDPGRS
GVGVLGPQGPYGAPGFDGPPGPVGEVGPKGLRGXNGKPGSTGLRGDVGPPGALGRPGDDG
KPGETGQPGQKGQMGADGIRGSQGPPGPQGDRGDTGPKGFQTPVEMYGDPGEPGEAGPTG
LTGTKGERGPLGPSGADGSSGRPGRSGPQGLPGDAGRDGETGPPGSCGLSGNQGEMGKPG
VKGEKGCAGPCGEPGSDGKPGPGGLKGAKGEPSPPGPGSKGFRGEKGNSGCSGPTGVKGV
QGEIGNVGPPGDTGPCGPKGLSGPQGCRGPPGTPGEKGCDGPPGTNGPVGPTGLTGNKGA
PGDPGPSGPRGNQGQDGIPGPPGEKGAMGAPGIGPRGPEGKTGPPGCAGETGPPGVCGPP
GSLGPGGNPGCPGSSGPPGPPGCPGREGVCTEGSKGETGLPGERGPKGPTGFRGPPGPPG
PGFKGDKGIKGAPGNPGPLGYPGDPGPPGEPGEDRPPGPRGLKGLMGETGVPGPVGMKGE
DGPPGNFGLQGPPGPPGRRGPRGEDVSAKVVLLPGNVGLPGGQGPPGERGPPGPQGTPAG
PGFKGIRGRAGRRGQVGRPGLRGEQGDPGFPGPKGVTGSRGPTGAKGVQGRSGPCSDAPE
KDGFLFTRHSQELFVPECPAGSTQMYSGYSLLFINGNNRAHGQDLGTLGSCLPRFTTMPF
LFCSMDSTCRYASRNDYSYWLSTDEPLPGSMPLISGDLLKNYISRCTVCEARANVIAVHS
QTSIIPDCPSGWDPLWFGYSFVMVSSFCQVVKQESGQRGQVSHWRLLDPVWKTSGRFPSL
SVTAEERATTTPTPTATGWPRSTPETCSVNRSLRLIQESFRAV
NT seq
4992 nt
NT seq
+upstream
nt +downstream
nt
atggaggctccgggctgcccgaggcggaggatcgttccgctgctgcttctgctgctctgc
tgcaccgccgctccgggacgcgccgagagggtgtgtcactgcagcgggaagtctctgtgt
cactgtgacggggtcaaaggtcaaaagggtgaacccggttaccttggatacgatggactc
cctggagtgataggttaccctggaaacgagggccaccagggctcacctggagaaaagggt
gagcagggaccagcaggaagttcaggactgaaaggctctcgaggtcttccaggaaaacca
ggttttccaggacctccaggattgccgggactccctggacatgaaggaccaatcggcaaa
ccaggactcccaggatgcaatgggacaaagggggacgttggttacccagggtaccctgga
gctccaggacccgtcggcctacaaggtcgaccaggactgcgaggggcaaagggagactcg
tacatctttcccgtcactcaggatattaaaggagcgccgggacctcgaggaccagacgga
gaaaacgggctgagtggagatccaggtgaaccgggcctgccaggaccgccgggatccccc
ggacttcctgggagtcccgggcagtcggggttagcgggagagaagggtcaggagggtccc
agtccggtcatcccgggtccccggggacagaggggtgaccgtggcccaccagggatcccg
ggacagaagggaattaaactgtacgcagaaggacccaaagaactgaagggggaaccaggt
gaagttggattcaaaggctgtcaaggacttcctggtgtgcctgggaaggtcggggttaaa
ggaggaaagggcgggcgaggagatcctggttccctgggtaaaccggggaaggacggcgtc
ccgggagagctgggagaaccgggcgagccaggggatcgtgggtacctcggccctccaggt
atcgatggagccacgggagagaaaggggagcgaggttttccaggtctgcccggagagatg
gtttggaaacacattttcctgaagggccagcctggtgtcgcggggcccngcggacccaca
ggagtgccaggagaacaaggactcattggatttcctggactgcagggcgagtcaggtgtg
gggatcactggtccacccggcccccaggggccacctggctcgagtggacccaaaggagag
ccaggagagccggggcccctcatcgctgggcccccgggaaagactggagtcccaggaggt
cctggagttgcaggagaaccaggagaaccgggaataccagatttcctgccgggagacgtc
ggttctccaggagctaaaggtctaaaaggcccggtgggatttcctggaatcagaggggag
gagggacggacgggtgagaagggggagctgtgctccaactgtcgggttatttctggcccc
ccaggacctccaggtaaaccaggcgagccaggtgaagacggggtaccaggatcaggcggt
tttccaggacccaaaggtaacaagggggtcaaaggtgtcacaggcccacctggcccgcag
ggcccctttggtatccccggcctcccggggcccccggggcctatcggtgaccctgggatc
atgcagcgggtggggcagaagggggaggacggggacctgggggagccaggaacgccgggt
ttcccgggaaaagatggagctcgaggactgacgggacggagaggtgttctgggacagaaa
ggaaaccctgggccgccgggttcaaaaggcgagaggggcccgctaggggagactggtccc
agaggactaacgggacagatgggacctccgggaccacctggaatcggggctccgggacct
ccaggacctaagggcaacgtgggagtcttgggacagcgaggagatcctggaaaaccaggc
gaaaaaggttctccaggtgaaatcagaacctctctaggagacccaggacagaaaggagag
aaaggtttagccggaaaccccggacctgaaggtgtgacaggatttccaggtgctccagga
gttgttggtccaaagggggaaagaggagatgtcggattttcaatccaggggcctccaggc
ttcccaggggtcaaaggactcaagggtcctctgggggctccaggtttaccaagttttggt
atcaagggtcgggcagggccatcaggtcccccagggatgccgggccccaagggggacaac
ggtatcggtttcccaggtcagcagggtcagtcaggcccccagggggaagatggctctgtg
gggctccaaggaaaccccggacccccggggcgagatggagctccaggacctccaggacaa
gatggacctcctggacccaaaggtcgtcgaggtctggacggcgtccctggtccggttgga
tttgttgggctgtgtttaccaggagctcctggacctgaaggagagcagggacagatgggt
gtcatcggattcacagggacccgaggcccaaagggtgtgcgaggtgaccctgggcggtca
ggcgtgggagtccttggaccacaggggccttacggggcccctgggtttgatggacctcct
gggccagtaggagaagttggtccaaagggcctgagaggangcaatgggaagccaggaagc
acaggtctcagaggggacgtgggtcctccaggagcacttgggaggccaggggatgatggg
aagcctggagagactggacagccaggacagaaaggtcaaatgggtgcagacgggatcagg
ggttctcaggggcctccggggcctcagggggacagaggagacactggaccaaaaggattc
cagacgcctgtggagatgtatggagatcctggagaacctggagaagccggacccacaggt
ctcactggtactaaaggagagaggggccccctggggccatcaggagccgacggcagcagc
ggtagacctggacgcagcgggccacaaggacttcctggagacgccggcagagatggagag
acaggtcctcctggttcctgtggactcagcggcaaccaaggagagatgggaaaaccaggt
gttaaaggggagaaaggttgtgcagggccttgtggggaacctggatcagatggaaaacca
ggaccaggaggacttaaaggtgctaaaggagaaccaagtccacctggaccaggatctaaa
ggatttcgaggagagaaggggaattcagggtgttcaggaccaacaggtgtgaagggggta
caaggggaaattggaaacgttggtcctccaggagacactggcccctgtggccccaaagga
ctgtctggtccccagggatgcagaggtcctcctgggactcctggtgaaaagggctgtgac
ggtcctccggggacaaatgggcccgtgggacccaccggcctcacgggtaacaagggggct
cctggagatcctggtccatcaggtcccagaggaaaccagggacaggacgggatcccggga
cctcctggagagaaaggagccatgggagctcctggaatcggaccccggggcccagaggga
aagacaggtccacctgggtgtgccggggagacgggtcctcctggtgtctgcggtccacct
ggttctctcggtcctgggggaaacccaggttgtcctggttcttccgggccccctggtcct
cctggttgtcccggcagagagggagtctgcactgaaggaagcaaaggagagacgggactc
cccggggaacgaggacccaaaggtccgacaggctttcggggccctcctggtcctccaggt
cctggttttaaaggggacaagggaattaaaggagcaccgggtaacccgggaccgctcggt
taccctggagatcctggacctccaggcgagccgggtgaagacagaccaccaggtccacga
ggactcaaaggcctgatgggagaaactggagtcccaggacctgttggcatgaagggggag
gacggacctccgggtaactttggcttgcaaggacctccaggaccacctgggaggagaggc
ccgaggggggaggacgtatctgcaaaggtggtgctgttgccaggaaacgtaggcttacct
ggaggacagggaccaccaggagagagaggacccccagggccccaagggacacctgcaggt
ccaggttttaagggcatcagaggaagggccggaagaagaggacaagttggacgtcctgga
ctgagaggggaacagggagacccaggattccctggaccaaaaggagtcacaggctcacga
ggtccgaccggtgctaaaggtgtgcaaggtcgatcgggtccgtgcagtgacgcgccggag
aaggacggcttcctgttcaccagacacagccaggaactcttcgtcccagaatgccccgca
gggtcgacgcagatgtacagcggatactcgctgctgttcatcaacgggaacaaccgagct
cacggacaagacctgggtacattaggcagctgtttacctcgttttaccaccatgcccttc
ctgttctgcagcatggacagcacctgtcgctacgcatcacgcaacgactactcctattgg
ctgtcaaccgatgaaccgctgccaggcagcatgccattaatctccggagatttactcaag
aattacatcagccggtgcacagtatgtgaagccagagccaacgtgatcgccgtccacagt
cagaccagtatcatcccagactgtccctcaggctgggacccgctctggttcggatactcc
ttcgtgatggtgagctcgttttgtcaagtcgtgaaacaggagtcggggcagaggggtcag
gtcagccattggcgtctcctggatcctgtctggaaaacttccggaagattcccttcattg
agtgtcacggcagaggaacgtgcaactactacaccgactcctacagctactggctggccg
cgctcaaccccggagacatgttcagtaaaccgaagcctcagactgatacaggagagtttc
cgggcagtctga
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integrated database retrieval system
