Plectropomus leopardus (leopard coralgrouper): 121942815
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Entry
121942815 CDS
T07454
Symbol
col4a3
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep04510
Focal adhesion
plep04512
ECM-receptor interaction
plep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121942815 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121942815 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121942815 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plep04147
]
121942815 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
plep00536
]
121942815 (col4a3)
Exosome [BR:
plep04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121942815 (col4a3)
Glycosaminoglycan binding proteins [BR:
plep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121942815 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121942815
NCBI-ProteinID:
XP_042342016
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All DBs
Position
5:49942..90867
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AA seq
1663 aa
AA seq
DB search
MEAPGCPRRRIVPLLLLLLCCTAAPGRAERVCHCSGKSLCHCDGVKGQKGEPGYLGYDGL
PGVIGYPGNEGHQGSPGEKGEQGPAGSSGLKGSRGLPGKPGFPGPPGLPGLPGHEGPIGK
PGLPGCNGTKGDVGYPGYPGAPGPVGLQGRPGLRGAKGDSYIFPVTQDIKGAPGPRGPDG
ENGLSGDPGEPGLPGPPGSPGLPGSPGQSGLAGEKGQEGPSPVIPGPRGQRGDRGPPGIP
GQKGIKLYAEGPKELKGEPGEVGFKGCQGLPGVPGKVGVKGGKGGRGDPGSLGKPGKDGV
PGELGEPGEPGDRGYLGPPGIDGATGEKGERGFPGLPGEMVWKHIFLKGQPGVAGPXGPT
GVPGEQGLIGFPGLQGESGVGITGPPGPQGPPGSSGPKGEPGEPGPLIAGPPGKTGVPGG
PGVAGEPGEPGIPDFLPGDVGSPGAKGLKGPVGFPGIRGEEGRTGEKGELCSNCRVISGP
PGPPGKPGEPGEDGVPGSGGFPGPKGNKGVKGVTGPPGPQGPFGIPGLPGPPGPIGDPGI
MQRVGQKGEDGDLGEPGTPGFPGKDGARGLTGRRGVLGQKGNPGPPGSKGERGPLGETGP
RGLTGQMGPPGPPGIGAPGPPGPKGNVGVLGQRGDPGKPGEKGSPGEIRTSLGDPGQKGE
KGLAGNPGPEGVTGFPGAPGVVGPKGERGDVGFSIQGPPGFPGVKGLKGPLGAPGLPSFG
IKGRAGPSGPPGMPGPKGDNGIGFPGQQGQSGPQGEDGSVGLQGNPGPPGRDGAPGPPGQ
DGPPGPKGRRGLDGVPGPVGFVGLCLPGAPGPEGEQGQMGVIGFTGTRGPKGVRGDPGRS
GVGVLGPQGPYGAPGFDGPPGPVGEVGPKGLRGXNGKPGSTGLRGDVGPPGALGRPGDDG
KPGETGQPGQKGQMGADGIRGSQGPPGPQGDRGDTGPKGFQTPVEMYGDPGEPGEAGPTG
LTGTKGERGPLGPSGADGSSGRPGRSGPQGLPGDAGRDGETGPPGSCGLSGNQGEMGKPG
VKGEKGCAGPCGEPGSDGKPGPGGLKGAKGEPSPPGPGSKGFRGEKGNSGCSGPTGVKGV
QGEIGNVGPPGDTGPCGPKGLSGPQGCRGPPGTPGEKGCDGPPGTNGPVGPTGLTGNKGA
PGDPGPSGPRGNQGQDGIPGPPGEKGAMGAPGIGPRGPEGKTGPPGCAGETGPPGVCGPP
GSLGPGGNPGCPGSSGPPGPPGCPGREGVCTEGSKGETGLPGERGPKGPTGFRGPPGPPG
PGFKGDKGIKGAPGNPGPLGYPGDPGPPGEPGEDRPPGPRGLKGLMGETGVPGPVGMKGE
DGPPGNFGLQGPPGPPGRRGPRGEDVSAKVVLLPGNVGLPGGQGPPGERGPPGPQGTPAG
PGFKGIRGRAGRRGQVGRPGLRGEQGDPGFPGPKGVTGSRGPTGAKGVQGRSGPCSDAPE
KDGFLFTRHSQELFVPECPAGSTQMYSGYSLLFINGNNRAHGQDLGTLGSCLPRFTTMPF
LFCSMDSTCRYASRNDYSYWLSTDEPLPGSMPLISGDLLKNYISRCTVCEARANVIAVHS
QTSIIPDCPSGWDPLWFGYSFVMVSSFCQVVKQESGQRGQVSHWRLLDPVWKTSGRFPSL
SVTAEERATTTPTPTATGWPRSTPETCSVNRSLRLIQESFRAV
NT seq
4992 nt
NT seq
+upstream
nt +downstream
nt
atggaggctccgggctgcccgaggcggaggatcgttccgctgctgcttctgctgctctgc
tgcaccgccgctccgggacgcgccgagagggtgtgtcactgcagcgggaagtctctgtgt
cactgtgacggggtcaaaggtcaaaagggtgaacccggttaccttggatacgatggactc
cctggagtgataggttaccctggaaacgagggccaccagggctcacctggagaaaagggt
gagcagggaccagcaggaagttcaggactgaaaggctctcgaggtcttccaggaaaacca
ggttttccaggacctccaggattgccgggactccctggacatgaaggaccaatcggcaaa
ccaggactcccaggatgcaatgggacaaagggggacgttggttacccagggtaccctgga
gctccaggacccgtcggcctacaaggtcgaccaggactgcgaggggcaaagggagactcg
tacatctttcccgtcactcaggatattaaaggagcgccgggacctcgaggaccagacgga
gaaaacgggctgagtggagatccaggtgaaccgggcctgccaggaccgccgggatccccc
ggacttcctgggagtcccgggcagtcggggttagcgggagagaagggtcaggagggtccc
agtccggtcatcccgggtccccggggacagaggggtgaccgtggcccaccagggatcccg
ggacagaagggaattaaactgtacgcagaaggacccaaagaactgaagggggaaccaggt
gaagttggattcaaaggctgtcaaggacttcctggtgtgcctgggaaggtcggggttaaa
ggaggaaagggcgggcgaggagatcctggttccctgggtaaaccggggaaggacggcgtc
ccgggagagctgggagaaccgggcgagccaggggatcgtgggtacctcggccctccaggt
atcgatggagccacgggagagaaaggggagcgaggttttccaggtctgcccggagagatg
gtttggaaacacattttcctgaagggccagcctggtgtcgcggggcccngcggacccaca
ggagtgccaggagaacaaggactcattggatttcctggactgcagggcgagtcaggtgtg
gggatcactggtccacccggcccccaggggccacctggctcgagtggacccaaaggagag
ccaggagagccggggcccctcatcgctgggcccccgggaaagactggagtcccaggaggt
cctggagttgcaggagaaccaggagaaccgggaataccagatttcctgccgggagacgtc
ggttctccaggagctaaaggtctaaaaggcccggtgggatttcctggaatcagaggggag
gagggacggacgggtgagaagggggagctgtgctccaactgtcgggttatttctggcccc
ccaggacctccaggtaaaccaggcgagccaggtgaagacggggtaccaggatcaggcggt
tttccaggacccaaaggtaacaagggggtcaaaggtgtcacaggcccacctggcccgcag
ggcccctttggtatccccggcctcccggggcccccggggcctatcggtgaccctgggatc
atgcagcgggtggggcagaagggggaggacggggacctgggggagccaggaacgccgggt
ttcccgggaaaagatggagctcgaggactgacgggacggagaggtgttctgggacagaaa
ggaaaccctgggccgccgggttcaaaaggcgagaggggcccgctaggggagactggtccc
agaggactaacgggacagatgggacctccgggaccacctggaatcggggctccgggacct
ccaggacctaagggcaacgtgggagtcttgggacagcgaggagatcctggaaaaccaggc
gaaaaaggttctccaggtgaaatcagaacctctctaggagacccaggacagaaaggagag
aaaggtttagccggaaaccccggacctgaaggtgtgacaggatttccaggtgctccagga
gttgttggtccaaagggggaaagaggagatgtcggattttcaatccaggggcctccaggc
ttcccaggggtcaaaggactcaagggtcctctgggggctccaggtttaccaagttttggt
atcaagggtcgggcagggccatcaggtcccccagggatgccgggccccaagggggacaac
ggtatcggtttcccaggtcagcagggtcagtcaggcccccagggggaagatggctctgtg
gggctccaaggaaaccccggacccccggggcgagatggagctccaggacctccaggacaa
gatggacctcctggacccaaaggtcgtcgaggtctggacggcgtccctggtccggttgga
tttgttgggctgtgtttaccaggagctcctggacctgaaggagagcagggacagatgggt
gtcatcggattcacagggacccgaggcccaaagggtgtgcgaggtgaccctgggcggtca
ggcgtgggagtccttggaccacaggggccttacggggcccctgggtttgatggacctcct
gggccagtaggagaagttggtccaaagggcctgagaggangcaatgggaagccaggaagc
acaggtctcagaggggacgtgggtcctccaggagcacttgggaggccaggggatgatggg
aagcctggagagactggacagccaggacagaaaggtcaaatgggtgcagacgggatcagg
ggttctcaggggcctccggggcctcagggggacagaggagacactggaccaaaaggattc
cagacgcctgtggagatgtatggagatcctggagaacctggagaagccggacccacaggt
ctcactggtactaaaggagagaggggccccctggggccatcaggagccgacggcagcagc
ggtagacctggacgcagcgggccacaaggacttcctggagacgccggcagagatggagag
acaggtcctcctggttcctgtggactcagcggcaaccaaggagagatgggaaaaccaggt
gttaaaggggagaaaggttgtgcagggccttgtggggaacctggatcagatggaaaacca
ggaccaggaggacttaaaggtgctaaaggagaaccaagtccacctggaccaggatctaaa
ggatttcgaggagagaaggggaattcagggtgttcaggaccaacaggtgtgaagggggta
caaggggaaattggaaacgttggtcctccaggagacactggcccctgtggccccaaagga
ctgtctggtccccagggatgcagaggtcctcctgggactcctggtgaaaagggctgtgac
ggtcctccggggacaaatgggcccgtgggacccaccggcctcacgggtaacaagggggct
cctggagatcctggtccatcaggtcccagaggaaaccagggacaggacgggatcccggga
cctcctggagagaaaggagccatgggagctcctggaatcggaccccggggcccagaggga
aagacaggtccacctgggtgtgccggggagacgggtcctcctggtgtctgcggtccacct
ggttctctcggtcctgggggaaacccaggttgtcctggttcttccgggccccctggtcct
cctggttgtcccggcagagagggagtctgcactgaaggaagcaaaggagagacgggactc
cccggggaacgaggacccaaaggtccgacaggctttcggggccctcctggtcctccaggt
cctggttttaaaggggacaagggaattaaaggagcaccgggtaacccgggaccgctcggt
taccctggagatcctggacctccaggcgagccgggtgaagacagaccaccaggtccacga
ggactcaaaggcctgatgggagaaactggagtcccaggacctgttggcatgaagggggag
gacggacctccgggtaactttggcttgcaaggacctccaggaccacctgggaggagaggc
ccgaggggggaggacgtatctgcaaaggtggtgctgttgccaggaaacgtaggcttacct
ggaggacagggaccaccaggagagagaggacccccagggccccaagggacacctgcaggt
ccaggttttaagggcatcagaggaagggccggaagaagaggacaagttggacgtcctgga
ctgagaggggaacagggagacccaggattccctggaccaaaaggagtcacaggctcacga
ggtccgaccggtgctaaaggtgtgcaaggtcgatcgggtccgtgcagtgacgcgccggag
aaggacggcttcctgttcaccagacacagccaggaactcttcgtcccagaatgccccgca
gggtcgacgcagatgtacagcggatactcgctgctgttcatcaacgggaacaaccgagct
cacggacaagacctgggtacattaggcagctgtttacctcgttttaccaccatgcccttc
ctgttctgcagcatggacagcacctgtcgctacgcatcacgcaacgactactcctattgg
ctgtcaaccgatgaaccgctgccaggcagcatgccattaatctccggagatttactcaag
aattacatcagccggtgcacagtatgtgaagccagagccaacgtgatcgccgtccacagt
cagaccagtatcatcccagactgtccctcaggctgggacccgctctggttcggatactcc
ttcgtgatggtgagctcgttttgtcaagtcgtgaaacaggagtcggggcagaggggtcag
gtcagccattggcgtctcctggatcctgtctggaaaacttccggaagattcccttcattg
agtgtcacggcagaggaacgtgcaactactacaccgactcctacagctactggctggccg
cgctcaaccccggagacatgttcagtaaaccgaagcctcagactgatacaggagagtttc
cgggcagtctga
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