Plectropomus leopardus (leopard coralgrouper): 121943077
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Entry
121943077 CDS
T07454
Symbol
hmgb1b
Name
(RefSeq) high mobility group protein B1b
KO
K10802
high mobility group protein B1
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03410
Base excision repair
plep04140
Autophagy - animal
plep04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121943077 (hmgb1b)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121943077 (hmgb1b)
09143 Cell growth and death
04217 Necroptosis
121943077 (hmgb1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plep03036
]
121943077 (hmgb1b)
03400 DNA repair and recombination proteins [BR:
plep03400
]
121943077 (hmgb1b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plep04147
]
121943077 (hmgb1b)
Chromosome and associated proteins [BR:
plep03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
121943077 (hmgb1b)
DNA repair and recombination proteins [BR:
plep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
121943077 (hmgb1b)
MMR (mismatch excision repair)
Other MMR factors
121943077 (hmgb1b)
Exosome [BR:
plep04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
121943077 (hmgb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
HMG_box_5
Ribosomal_60s
DUF4653
Motif
Other DBs
NCBI-GeneID:
121943077
NCBI-ProteinID:
XP_042342391
LinkDB
All DBs
Position
5:complement(25535331..25537940)
Genome browser
AA seq
201 aa
AA seq
DB search
MRKDPRKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSPKEKGKFE
DKAKEDKVRYEREMKNYIPPKGQKKKRFKDPNAPKRPPSAFFLFCADFRPKVKSEHPGLG
IGDTAKKLGEMWNSSSAENKQPYERKASKLKEKYDKDIVAYRTKGTVDSAPAAAAEDDEE
EEEEEEEGEEEEEDDDDDEDD
NT seq
606 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaggatcctcggaagccgaggggcaagatgtcctcatatgcctactttgtgcaa
acatgcagagaggagcataagaagaaacatcccgatgcctctgtcaactttgcagagttc
tccaagaaatgttctgagcgatggaagaccatgtccccaaaagagaaaggcaagtttgaa
gataaggccaaagaagacaaggtgcgttatgagagggaaatgaagaattacattccccca
aagggccagaagaagaagagattcaaggaccccaatgcccccaagagaccaccgtctgca
ttcttcctgttctgtgcggactttcgccccaaggtgaaaagtgagcatcctggactcggc
attggggacacggcaaagaagctgggagagatgtggaacagctcatctgcggagaacaag
cagccgtatgagaggaaggcttccaagttgaaggagaaatatgacaaggatattgttgcc
taccgcacaaagggcactgtggattcagcacctgccgccgcagcagaagatgatgaggag
gaggaggaagaagaggaggagggagaagaggaggaagaggacgatgatgatgatgaggat
gattag
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integrated database retrieval system
