Plectropomus leopardus (leopard coralgrouper): 121943178
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Entry
121943178 CDS
T07454
Symbol
rpa1
Name
(RefSeq) LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03030
DNA replication
plep03420
Nucleotide excision repair
plep03430
Mismatch repair
plep03440
Homologous recombination
plep03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121943178 (rpa1)
03420 Nucleotide excision repair
121943178 (rpa1)
03430 Mismatch repair
121943178 (rpa1)
03440 Homologous recombination
121943178 (rpa1)
03460 Fanconi anemia pathway
121943178 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plep03000
]
121943178 (rpa1)
03032 DNA replication proteins [BR:
plep03032
]
121943178 (rpa1)
03400 DNA repair and recombination proteins [BR:
plep03400
]
121943178 (rpa1)
Transcription factors [BR:
plep03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121943178 (rpa1)
DNA replication proteins [BR:
plep03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
121943178 (rpa1)
DNA repair and recombination proteins [BR:
plep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
121943178 (rpa1)
MMR (mismatch excision repair)
121943178 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
121943178 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
IBR
Motif
Other DBs
NCBI-GeneID:
121943178
NCBI-ProteinID:
XP_042342566
LinkDB
All DBs
Position
5:complement(23355435..23409563)
Genome browser
AA seq
599 aa
AA seq
DB search
MTKLSEGAIVALSNGTGGSDSVLQLVNIRKIDGGNGPARFRVMMSDGLHTLSSFMLSTQL
NYMAEENMLAPNCICILKRHVTNILKDTRRVVIILELEVIKTADEVAGKIGDPTPYTDGQ
PKGPQSAPVPEIRPPLQQHNTNEVNRGFNRDFGKKNPSAMPSTPGGSSKVVPIASLNPYQ
SKWTIRARVTNKSSIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFFSLIEVGKV
YYVSKGSLKIANKQYTSVKNDYEMTLNGESTVXPCEDSCDVPMVQCDFVSIGDLENRDKD
AIIDVIGVCKSVEEVTRLTTKSNREVSKRTISLMDMSGKMVTVTLWGEEAEKFEGSGQPI
VAIKGAKLSDYGGRSLSASFSSTLMINPDIPEAYKLRGWYDKEGHAMDGQSLTEMRSSGG
GLTNWKTLSDVKTEHLGHGDKADYYTCIATIVYLRKENCLYQACPSQDCNKKVIDQQNGM
YRCEKCDKEFPNFKYRLILSANIADYADNQWVTLFQESAEAILGQNAAYLGQLKDSNEAA
FDEVFQQANFNTFVFRSRVKLETYNDESRIKATVMEVKPVDHKDYSRRLIMNIRKQAAQ
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagctctcagagggtgccattgtggctctatcaaatggcaccggtggcagcgac
tcagtgcttcagctggtgaacattcgcaagattgatggaggaaatggtccagctcgcttt
cgggtgatgatgagtgatggcctgcatactttgtcctccttcatgctctcaacacagctg
aactacatggctgaggagaacatgctggccccgaactgcatctgcattctgaagaggcat
gtgaccaatatactgaaggatacacgacgggtggtgattattttggaattggaagtcatt
aagactgctgatgaagttgctggaaaaataggtgacccgactccttacacagatggtcag
cccaaaggcccgcaatctgcgccagtccctgaaatccgccctccactacagcagcacaat
acaaatgaagtgaacagaggtttcaacagagactttgggaaaaagaacccgtctgctatg
cccagcactccagggggcagctccaaagttgtacccattgccagcctcaacccataccag
tccaaatggaccatccgcgctcgtgtgaccaacaagagcagtatccgtacatggagcaac
tctcgtggtgatggaaaactcttctccatggagattgtggatgagagtggagagatacga
gtgactggtttcaaccaagaggtggacaagttcttcagcctcattgaggttgggaaggtc
tactatgtctccaaaggctccctgaagatcgccaacaagcagtacacatcagtgaagaat
gattatgagatgaccctcaatggagagtccactgtcnatccctgcgaagacagctgcgat
gttcccatggtgcagtgcgattttgtctctattggtgacctggagaacagagataaagat
gccatcattgacgtgattggagtgtgtaagagtgtggaggaagtgacccgcctcactacc
aagtccaacagagaagtgtccaagaggacgatcagcctgatggacatgtccgggaagatg
gtgactgtcacgctgtggggagaggaagcagaaaagtttgaaggctctggacagcccatt
gtggccattaagggggcgaagctttcagactatggaggccggtccctgtctgcatctttc
agcagcaccctgatgatcaacccagacatccctgaggcttataagctccgaggctggtat
gacaaggagggacatgctatggatggacagtccctgacagagatgagaagcagcggtgga
ggactcaccaactggaagactctatctgacgttaagacggagcacctgggacacggagac
aaggcagactactacacctgcatcgctaccatagtgtacctgcgcaaggaaaactgcctt
taccaggcctgtcccagccaagactgcaacaaaaaagtgatagatcaacagaatggcatg
taccgctgcgaaaagtgtgacaaagaattccccaacttcaagtaccgcctcatcctttct
gccaacattgcagattatgcagacaaccagtgggtgactctcttccaggagagtgcagag
gccatcctgggccagaacgcagcttacctggggcagctcaaggactcgaatgaagccgcc
ttcgacgaggttttccaacaagccaacttcaacacttttgtcttccgcagcagagtgaag
ctagaaacgtataacgacgaatccaggatcaaggccacagtgatggaggtaaagcctgtt
gaccataaggactacagcaggaggctgatcatgaacataaggaaacaggccgctcagtag
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