Plectropomus leopardus (leopard coralgrouper): 121943441
Help
Entry
121943441 CDS
T07454
Symbol
col4a4
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep04382
Cornified envelope formation
plep04510
Focal adhesion
plep04512
ECM-receptor interaction
plep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121943441 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121943441 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121943441 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121943441 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plep04147
]
121943441 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
plep00536
]
121943441 (col4a4)
Exosome [BR:
plep04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121943441 (col4a4)
Glycosaminoglycan binding proteins [BR:
plep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121943441 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121943441
NCBI-ProteinID:
XP_042342898
LinkDB
All DBs
Position
5:complement(6924..45090)
Genome browser
AA seq
1667 aa
AA seq
DB search
MLLTSCSAPCSYTWLWCLLMILTAPPAALGGDQTEPCAGRDCSTCQCFPAKGARGAPGPL
GQQGPQGPPGFPGPQGPPGQKGQRGDEGPTGAVGLKGDLGSVGVPGFPGLEGVPGHPGPA
GGPGFPGLDGCNGTRGERGEPGLSGGQGPDGEPGFPGLKGFPGDPAFYFIQYPGIPGDRR
ARGLSGRPGEGGLPGPMGALGPAGLDGTNGLPGLPGARGPPGEKGRSLPGQKGDEGDQGL
QGPPGPFEYVDPPEDLYIKGEQGIRGLKGVCGNQGLPGLDSLKGIKGEKGIVGFPGPRGF
SGNRGVVGVRGVKGIQGIPGLPGLIGREGPKGMMGDPGLKGLPQEAEITHTGDVGESGAS
GLRGPPGDMGLMGMHGPPGAPGRSLPGPPGAVGQRGAPGSRGDRGDPGQVYKNGPTPGEP
GKPGRPGPKGLKGEPGVPGTYCLPGAPGQAGDPGDXGAPGGQGFVGFKGSAGDCACGPPV
ELRGAPARAGDPGSPGFPGAPGSLGQRGEKGVPGDMGVRGQQGLAGFPGVTGFKGQKGDF
IVVEFKGDKGNRGQQGPRGRQGFSGRRGLDGAPGAPGYPGPQGDSFSSAPGDRGFPGLPG
PKGLSGPAGPLGRGVVGAVGLRGAPGNPGPQGFPGPPGPKGVRGDTLPCVPRNPGAPGEK
GDRGDAGYPGLPGPPGFNGITGPDGVKGDKGQSGLPGLPGRQGPPGLLGDPGEEGSEGIS
YGGDPGSPGLPGFPGLRGPAGNSYVGPSGPIGFPGRPGSQGPKGVPGPPGNDGLKGLLGL
AGGPGPKGQRGQDGAPGVTGPQGPSPERCDAGKPGPRGLFGPQGPIGPPGFPGEKGEIGE
VGPPGFGPQGPEGKPGTPGFPGYPGPQGPPGPSGNSGLLGPIGLKGLMGPRGQVGGPGVP
GQTGALGAPGRTGERGSNGQDGGPGCEGPKGEKGCKGAQGPPGETKVILIKGGRGKDGPA
GLNGFPGSRGNKGARGATGKPGYPGINGPPGIVGIPGPPGPYGKPGPPGPTGRTGPPGFI
GFPGETGDPGNLGCPGKDGEPGHQGCAGSTGDKGDSVGCPGPPGEKGPAGDFGASGPPGP
RGDPGGPGFIGAPGQRGCKGDPGHQGDLGQPGVVGPSGPRGRSGLSGLPGKAGADGPPGP
QGSPGLQGPPGPLGLHGLDGLKGVKGDMGTRGLGVPGPPGSNGLPGDKGPPGPPGPFGSS
QPGPPGPRGPPGSTGPPGGLGPEGKPGPDCKSPILGPRGDTGCTGPDGDSGCAGEVGDPG
LNPPVPGDDGDNGDTGCQGPVGPKGSAGPRGLPGIPGNPGVKGIRGSPGLMGLPGNRGPR
GCTGASGPPGPKGFAGPMGPKGEKGRVSPCPTYPPATQGPPGPPGLPGQPGDVGLEGEVG
RRGAKGRKGDIGPEGPIGPEGPLGPDGERGVPGLPGESGAVGAKGDPGPIGDRGPAGPTK
NLNSGFLLVMHSQSKFVPSCPPNMRVLWVGYSLLYLEGQEKAHTQDLGQAGSCMRVFSTM
PFSSCNMGTCSYASRNDKSYWLSTTAAVPSIPVGGASIEDHISRCVVCEAPSPPVALHSQ
TSNQPDCPPSWRSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLTDFRAQPFVECQGPRGTC
HYFANIYSFWLTRVEATPSASNGSSTTLTEGWQQRESIGRCNVCMRE
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgacttcctgctccgccccctgcagctacacctggctctggtgcctcctgatg
atcctgacggctcctccagcagctctcgggggcgaccagacggagccgtgcgctggtcgg
gattgctccacctgtcaatgtttcccagccaaaggagccaggggcgctccgggtcctctg
gggcaacagggccctcaggggcctccaggattcccgggtcctcagggtccaccaggacag
aagggccagcgaggagacgaggggccgacaggagctgtgggactgaaaggagatttggga
agtgtcggcgttcccggttttccaggtttagagggagtcccgggtcacccgggtcctgcc
ggaggtcctggttttcctggactggacggatgtaacggaaccagaggagagaggggagag
cctggactttcaggaggacaaggacctgatggagaaccgggttttccaggactgaaggga
tttccaggagatccggcattctacttcatacagtaccctggaatacctggagaccggcgc
gctcgtggactttccggtcgaccgggtgaagggggtctgcccggaccgatgggagctctg
ggtcctgcaggacttgacgggaccaacggtctccccggtctacctggagccaggggccca
cctggagaaaaaggacgatctctgcctggacagaaaggagacgagggggaccagggcctc
caggggcctccggggccctttgagtacgtcgaccctccagaagacctgtacatcaaagga
gaacagggtattcgaggtctgaaaggagtctgtggaaatcagggactaccgggtttggac
tctctcaaggggatcaaaggagagaaggggattgtgggatttcctggacccaggggattt
tccggtaaccgcggtgtggtcggagtgagaggagtcaaggggattcaaggaattccaggt
ctgccaggtctgattggacgagaaggccctaagggcatgatgggagatccgggccttaaa
ggcctccctcaggaagcagaaatcacgcacacgggtgacgttggagaatccggggcgtcc
ggactgaggggccctccaggggacatggggctgatggggatgcacggccccccaggagcc
cccggcagatccttaccagggccgccgggcgctgtgggtcagaggggagctccaggatcc
agaggggacagaggagacccaggacaggtttacaaaaacggacccacacctggagaaccg
ggaaaaccaggacgacccggacccaaaggactgaagggagaacctggagttccaggtact
tactgtcttcccggggctccaggacaggctggagatccaggtgatncaggggcccctggg
ggccagggcttcgtgggttttaaaggtagcgctggcgactgtgcctgtggccccccagtt
gaattgaggggtgcccccgcgcgcgcgggtgatccggggtctccggggtttccaggggcc
ccggggtccctggggcagagaggagagaaaggtgtacccggagacatgggagtgcgtgga
caacagggtctggctggatttccaggtgtcacagggttcaaaggtcagaagggagatttc
atagtggtggaatttaaaggtgataaaggaaacaggggccagcagggccctagaggcaga
caagggttctcaggacgaagaggactggacggggctccgggggcccctggataccccggc
ccacagggtgacagtttctccagcgctcctggagacaggggcttcccaggactcccagga
ccaaagggattatcaggacctgcagggcccctgggacgaggcgtggtaggagctgtagga
ctgcgtggggcccctgggaacccgggacctcaaggatttcctggtcctccggggccgaag
ggagttagaggtgacactctgccctgtgtacccagaaaccccggcgcccccggagaaaaa
ggagaccgtggagatgcaggttacccaggtctcccaggtcctccaggttttaatggcatc
actggtcctgatggagtaaaaggagacaaaggacagtctggacttcctggactacctgga
agacaaggacctccaggtttactcggagatccgggagaagagggatctgaaggcatcagt
tatggtggagatccaggttctccagggctcccaggctttcctggactcaggggcccagca
ggaaactcttatgttgggccctcaggacctattggctttccagggcgaccgggttctcag
ggacctaaaggagtccctggtccccctggtaacgacggactaaaaggactcctgggtctg
gctggtggccccggacctaagggccaaaggggacaggatggagccccaggtgtaaccggc
cctcagggaccctcacctgaacgctgtgatgcaggaaaacctggtcccagaggccttttt
ggcccccagggacccataggacccccaggttttccgggggagaaaggtgagatcggggag
gtgggtcctccaggttttggccctcaaggccctgaagggaaaccgggcactccaggtttt
ccaggttacccagggcctcagggcccccctggccccagcggaaactcaggactgctgggg
cccattggtctgaaaggtctgatggggccccggggccaggtcggagggccaggagtccct
gggcagactggggcccttggagcccctgggaggacgggggagagagggtccaacggccaa
gacggaggtccaggatgtgagggaccgaaaggagaaaaaggctgtaaaggggcccagggg
cctccaggagaaaccaaggttatcctcatcaaaggaggacgaggaaaagacggaccggca
ggcctcaacggcttccctggatcccgaggaaataaaggtgcgagaggagctaccggtaag
ccagggtatccaggtattaatggacccccaggcattgtaggaatcccgggacccccaggg
ccctacggaaaaccaggacctccaggaccaactggacgtacaggaccaccaggattcatc
gggttccccggagagactggagatccgggtaacctgggatgtccggggaaagatggagaa
cccggtcaccaaggatgtgccggatccacaggtgataaaggagactctgttggttgtcct
ggtccaccaggagaaaaggggcctgcaggagacttcggggcctcaggacctccgggacct
cgaggagatcctggaggacccggttttatcggagctccgggacagagaggatgcaaagga
gatccaggccatcagggagacctgggccagccgggtgtggtcggcccctcaggtcccaga
ggtcgctctggtctttcaggtcttcctggtaaagcaggtgctgatggtcctccaggaccg
caaggctctccaggacttcaaggtcctcctgggccgcttggacttcacgggttggacgga
ctgaaaggcgtgaagggggacatggggaccagaggtctgggcgtgccgggtcctccgggc
tccaacggtctcccaggagataaaggtcctccaggtcctccaggtccctttgggtcatcc
cagcctggccccccaggacccagagggcccccaggatccacaggacctccaggaggtttg
ggacctgaaggtaaacctggcccagactgtaagagtccgatcctggggccgcgtggagat
actggttgtactggaccagatggagactcagggtgtgctggtgaggtcggggaccctggt
ctgaaccctccggtgcctggagacgatggggacaacggggacacagggtgccaggggccg
gtgggcccaaaaggatctgcggggcccagaggactgccaggcatccctggaaatccagga
gtgaaaggcattcggggatctccaggtctgatgggacttcctggtaatcggggtcccaga
ggttgcaccggtgcaagtgggcctccgggaccgaagggttttgctggacccatgggtcca
aagggggagaagggccgagtgtccccctgccccacctaccctccagcgacacaggggccc
ccaggacccccaggcctccccggtcagcccggagatgtcggcctcgagggagaggtcggc
agaagaggcgcaaaaggtaggaagggggacatcgggcctgaggggccgataggccctgag
gggcccctgggtccagacggagagcgaggagtgccgggcctgccgggggagagcggcgcc
gtgggagccaaaggtgatcccggtccgatcggagaccgcggccccgcggggcccaccaaa
aacttgaactcgggcttcctgttggtgatgcacagccagtcgaagtttgtcccctcgtgt
ccaccgaacatgagagtcctgtgggtcggatacagtctgctgtacctggagggtcaggag
aaggctcacactcaggacctgggtcaggccgggtcctgcatgcgggtcttctccaccatg
ccgttctcctcctgtaacatgggaacctgctcgtacgccagccggaacgacaaatcctac
tggctgtcgacgacggccgccgtccccagtatcccggtgggcggagcctccatcgaagac
cacatcagccgctgcgtggtgtgtgaagccccctccccacctgtcgctctgcacagccag
acctccaaccagccagactgcccccccagctggaggagcctgtggaccggatactccttc
ctcatgcatacaggtgcaggtgacgagggcggcggccagtccctgacatcatcaggtagc
tgtctgacagacttcagggcccagcccttcgtggagtgtcaggggccccgaggaacctgc
cactacttcgccaacatctacagtttctggctgacgcgggtggaggcgacgccctccgcc
tccaacggctcctccaccacgctgaccgagggctggcagcagagggagagcatcgggagg
tgcaacgtctgcatgagggagtga
DBGET
integrated database retrieval system
