Plectropomus leopardus (leopard coralgrouper): 121943441
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Entry
121943441 CDS
T07454
Symbol
col4a4
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep04510
Focal adhesion
plep04512
ECM-receptor interaction
plep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121943441 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121943441 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121943441 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plep04147
]
121943441 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
plep00536
]
121943441 (col4a4)
Exosome [BR:
plep04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121943441 (col4a4)
Glycosaminoglycan binding proteins [BR:
plep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121943441 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121943441
NCBI-ProteinID:
XP_042342898
LinkDB
All DBs
Position
5:complement(6924..45090)
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AA seq
1667 aa
AA seq
DB search
MLLTSCSAPCSYTWLWCLLMILTAPPAALGGDQTEPCAGRDCSTCQCFPAKGARGAPGPL
GQQGPQGPPGFPGPQGPPGQKGQRGDEGPTGAVGLKGDLGSVGVPGFPGLEGVPGHPGPA
GGPGFPGLDGCNGTRGERGEPGLSGGQGPDGEPGFPGLKGFPGDPAFYFIQYPGIPGDRR
ARGLSGRPGEGGLPGPMGALGPAGLDGTNGLPGLPGARGPPGEKGRSLPGQKGDEGDQGL
QGPPGPFEYVDPPEDLYIKGEQGIRGLKGVCGNQGLPGLDSLKGIKGEKGIVGFPGPRGF
SGNRGVVGVRGVKGIQGIPGLPGLIGREGPKGMMGDPGLKGLPQEAEITHTGDVGESGAS
GLRGPPGDMGLMGMHGPPGAPGRSLPGPPGAVGQRGAPGSRGDRGDPGQVYKNGPTPGEP
GKPGRPGPKGLKGEPGVPGTYCLPGAPGQAGDPGDXGAPGGQGFVGFKGSAGDCACGPPV
ELRGAPARAGDPGSPGFPGAPGSLGQRGEKGVPGDMGVRGQQGLAGFPGVTGFKGQKGDF
IVVEFKGDKGNRGQQGPRGRQGFSGRRGLDGAPGAPGYPGPQGDSFSSAPGDRGFPGLPG
PKGLSGPAGPLGRGVVGAVGLRGAPGNPGPQGFPGPPGPKGVRGDTLPCVPRNPGAPGEK
GDRGDAGYPGLPGPPGFNGITGPDGVKGDKGQSGLPGLPGRQGPPGLLGDPGEEGSEGIS
YGGDPGSPGLPGFPGLRGPAGNSYVGPSGPIGFPGRPGSQGPKGVPGPPGNDGLKGLLGL
AGGPGPKGQRGQDGAPGVTGPQGPSPERCDAGKPGPRGLFGPQGPIGPPGFPGEKGEIGE
VGPPGFGPQGPEGKPGTPGFPGYPGPQGPPGPSGNSGLLGPIGLKGLMGPRGQVGGPGVP
GQTGALGAPGRTGERGSNGQDGGPGCEGPKGEKGCKGAQGPPGETKVILIKGGRGKDGPA
GLNGFPGSRGNKGARGATGKPGYPGINGPPGIVGIPGPPGPYGKPGPPGPTGRTGPPGFI
GFPGETGDPGNLGCPGKDGEPGHQGCAGSTGDKGDSVGCPGPPGEKGPAGDFGASGPPGP
RGDPGGPGFIGAPGQRGCKGDPGHQGDLGQPGVVGPSGPRGRSGLSGLPGKAGADGPPGP
QGSPGLQGPPGPLGLHGLDGLKGVKGDMGTRGLGVPGPPGSNGLPGDKGPPGPPGPFGSS
QPGPPGPRGPPGSTGPPGGLGPEGKPGPDCKSPILGPRGDTGCTGPDGDSGCAGEVGDPG
LNPPVPGDDGDNGDTGCQGPVGPKGSAGPRGLPGIPGNPGVKGIRGSPGLMGLPGNRGPR
GCTGASGPPGPKGFAGPMGPKGEKGRVSPCPTYPPATQGPPGPPGLPGQPGDVGLEGEVG
RRGAKGRKGDIGPEGPIGPEGPLGPDGERGVPGLPGESGAVGAKGDPGPIGDRGPAGPTK
NLNSGFLLVMHSQSKFVPSCPPNMRVLWVGYSLLYLEGQEKAHTQDLGQAGSCMRVFSTM
PFSSCNMGTCSYASRNDKSYWLSTTAAVPSIPVGGASIEDHISRCVVCEAPSPPVALHSQ
TSNQPDCPPSWRSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLTDFRAQPFVECQGPRGTC
HYFANIYSFWLTRVEATPSASNGSSTTLTEGWQQRESIGRCNVCMRE
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgacttcctgctccgccccctgcagctacacctggctctggtgcctcctgatg
atcctgacggctcctccagcagctctcgggggcgaccagacggagccgtgcgctggtcgg
gattgctccacctgtcaatgtttcccagccaaaggagccaggggcgctccgggtcctctg
gggcaacagggccctcaggggcctccaggattcccgggtcctcagggtccaccaggacag
aagggccagcgaggagacgaggggccgacaggagctgtgggactgaaaggagatttggga
agtgtcggcgttcccggttttccaggtttagagggagtcccgggtcacccgggtcctgcc
ggaggtcctggttttcctggactggacggatgtaacggaaccagaggagagaggggagag
cctggactttcaggaggacaaggacctgatggagaaccgggttttccaggactgaaggga
tttccaggagatccggcattctacttcatacagtaccctggaatacctggagaccggcgc
gctcgtggactttccggtcgaccgggtgaagggggtctgcccggaccgatgggagctctg
ggtcctgcaggacttgacgggaccaacggtctccccggtctacctggagccaggggccca
cctggagaaaaaggacgatctctgcctggacagaaaggagacgagggggaccagggcctc
caggggcctccggggccctttgagtacgtcgaccctccagaagacctgtacatcaaagga
gaacagggtattcgaggtctgaaaggagtctgtggaaatcagggactaccgggtttggac
tctctcaaggggatcaaaggagagaaggggattgtgggatttcctggacccaggggattt
tccggtaaccgcggtgtggtcggagtgagaggagtcaaggggattcaaggaattccaggt
ctgccaggtctgattggacgagaaggccctaagggcatgatgggagatccgggccttaaa
ggcctccctcaggaagcagaaatcacgcacacgggtgacgttggagaatccggggcgtcc
ggactgaggggccctccaggggacatggggctgatggggatgcacggccccccaggagcc
cccggcagatccttaccagggccgccgggcgctgtgggtcagaggggagctccaggatcc
agaggggacagaggagacccaggacaggtttacaaaaacggacccacacctggagaaccg
ggaaaaccaggacgacccggacccaaaggactgaagggagaacctggagttccaggtact
tactgtcttcccggggctccaggacaggctggagatccaggtgatncaggggcccctggg
ggccagggcttcgtgggttttaaaggtagcgctggcgactgtgcctgtggccccccagtt
gaattgaggggtgcccccgcgcgcgcgggtgatccggggtctccggggtttccaggggcc
ccggggtccctggggcagagaggagagaaaggtgtacccggagacatgggagtgcgtgga
caacagggtctggctggatttccaggtgtcacagggttcaaaggtcagaagggagatttc
atagtggtggaatttaaaggtgataaaggaaacaggggccagcagggccctagaggcaga
caagggttctcaggacgaagaggactggacggggctccgggggcccctggataccccggc
ccacagggtgacagtttctccagcgctcctggagacaggggcttcccaggactcccagga
ccaaagggattatcaggacctgcagggcccctgggacgaggcgtggtaggagctgtagga
ctgcgtggggcccctgggaacccgggacctcaaggatttcctggtcctccggggccgaag
ggagttagaggtgacactctgccctgtgtacccagaaaccccggcgcccccggagaaaaa
ggagaccgtggagatgcaggttacccaggtctcccaggtcctccaggttttaatggcatc
actggtcctgatggagtaaaaggagacaaaggacagtctggacttcctggactacctgga
agacaaggacctccaggtttactcggagatccgggagaagagggatctgaaggcatcagt
tatggtggagatccaggttctccagggctcccaggctttcctggactcaggggcccagca
ggaaactcttatgttgggccctcaggacctattggctttccagggcgaccgggttctcag
ggacctaaaggagtccctggtccccctggtaacgacggactaaaaggactcctgggtctg
gctggtggccccggacctaagggccaaaggggacaggatggagccccaggtgtaaccggc
cctcagggaccctcacctgaacgctgtgatgcaggaaaacctggtcccagaggccttttt
ggcccccagggacccataggacccccaggttttccgggggagaaaggtgagatcggggag
gtgggtcctccaggttttggccctcaaggccctgaagggaaaccgggcactccaggtttt
ccaggttacccagggcctcagggcccccctggccccagcggaaactcaggactgctgggg
cccattggtctgaaaggtctgatggggccccggggccaggtcggagggccaggagtccct
gggcagactggggcccttggagcccctgggaggacgggggagagagggtccaacggccaa
gacggaggtccaggatgtgagggaccgaaaggagaaaaaggctgtaaaggggcccagggg
cctccaggagaaaccaaggttatcctcatcaaaggaggacgaggaaaagacggaccggca
ggcctcaacggcttccctggatcccgaggaaataaaggtgcgagaggagctaccggtaag
ccagggtatccaggtattaatggacccccaggcattgtaggaatcccgggacccccaggg
ccctacggaaaaccaggacctccaggaccaactggacgtacaggaccaccaggattcatc
gggttccccggagagactggagatccgggtaacctgggatgtccggggaaagatggagaa
cccggtcaccaaggatgtgccggatccacaggtgataaaggagactctgttggttgtcct
ggtccaccaggagaaaaggggcctgcaggagacttcggggcctcaggacctccgggacct
cgaggagatcctggaggacccggttttatcggagctccgggacagagaggatgcaaagga
gatccaggccatcagggagacctgggccagccgggtgtggtcggcccctcaggtcccaga
ggtcgctctggtctttcaggtcttcctggtaaagcaggtgctgatggtcctccaggaccg
caaggctctccaggacttcaaggtcctcctgggccgcttggacttcacgggttggacgga
ctgaaaggcgtgaagggggacatggggaccagaggtctgggcgtgccgggtcctccgggc
tccaacggtctcccaggagataaaggtcctccaggtcctccaggtccctttgggtcatcc
cagcctggccccccaggacccagagggcccccaggatccacaggacctccaggaggtttg
ggacctgaaggtaaacctggcccagactgtaagagtccgatcctggggccgcgtggagat
actggttgtactggaccagatggagactcagggtgtgctggtgaggtcggggaccctggt
ctgaaccctccggtgcctggagacgatggggacaacggggacacagggtgccaggggccg
gtgggcccaaaaggatctgcggggcccagaggactgccaggcatccctggaaatccagga
gtgaaaggcattcggggatctccaggtctgatgggacttcctggtaatcggggtcccaga
ggttgcaccggtgcaagtgggcctccgggaccgaagggttttgctggacccatgggtcca
aagggggagaagggccgagtgtccccctgccccacctaccctccagcgacacaggggccc
ccaggacccccaggcctccccggtcagcccggagatgtcggcctcgagggagaggtcggc
agaagaggcgcaaaaggtaggaagggggacatcgggcctgaggggccgataggccctgag
gggcccctgggtccagacggagagcgaggagtgccgggcctgccgggggagagcggcgcc
gtgggagccaaaggtgatcccggtccgatcggagaccgcggccccgcggggcccaccaaa
aacttgaactcgggcttcctgttggtgatgcacagccagtcgaagtttgtcccctcgtgt
ccaccgaacatgagagtcctgtgggtcggatacagtctgctgtacctggagggtcaggag
aaggctcacactcaggacctgggtcaggccgggtcctgcatgcgggtcttctccaccatg
ccgttctcctcctgtaacatgggaacctgctcgtacgccagccggaacgacaaatcctac
tggctgtcgacgacggccgccgtccccagtatcccggtgggcggagcctccatcgaagac
cacatcagccgctgcgtggtgtgtgaagccccctccccacctgtcgctctgcacagccag
acctccaaccagccagactgcccccccagctggaggagcctgtggaccggatactccttc
ctcatgcatacaggtgcaggtgacgagggcggcggccagtccctgacatcatcaggtagc
tgtctgacagacttcagggcccagcccttcgtggagtgtcaggggccccgaggaacctgc
cactacttcgccaacatctacagtttctggctgacgcgggtggaggcgacgccctccgcc
tccaacggctcctccaccacgctgaccgagggctggcagcagagggagagcatcgggagg
tgcaacgtctgcatgagggagtga
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