Plectropomus leopardus (leopard coralgrouper): 121943947
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Entry
121943947 CDS
T07454
Symbol
pdlim5a
Name
(RefSeq) PDZ and LIM domain protein 5a isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121943947 (pdlim5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
plep04990
]
121943947 (pdlim5a)
Domain-containing proteins not elsewhere classified [BR:
plep04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
121943947 (pdlim5a)
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
Motif
Other DBs
NCBI-GeneID:
121943947
NCBI-ProteinID:
XP_042343494
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Position
6:complement(20653179..20725499)
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AA seq
988 aa
AA seq
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MSSNYSVTLVGPAPWGFRLQGGKDFNMPLTISRLTDGGKAAKGGIGIGDMVLSIDGIATE
GMNHLEAQNKIKSCTGNLSLTLQKAASVPKASPPPVAPKGDRSDIIKPVALTYPPPPPHP
HPHSSSPSITHHNKAPRPYGGCASESEYPPSQSPFTPFIPSPSSAFTPASSHASSPLPPP
PPPVSYPSSSSSSSSPPVLVAPQPSVYNTPINLYSTENACEVAMGQRRGLLESQGGALPL
QFNGVPRKHIVDTDIHFYHVPTHADASRKRIMEDTEDWRPRTGTTQSRSFRILAQITGTE
RAQDEEADAAKKTNCLSESETNGGQVSDRSPKHPSSDRVEISPSDAGANNIDQPQPDSGS
SASQEQPEEGASIPNYVLFSKPGSLLTSQHQENSVPSTAPLHLVAIPMTYSSSVDMFCQI
HPTHLSNMSYPLAPVLVPLTYTGPSQIPSSHAQRPNDTSLDALFMPANIPHFLGPSAVST
HTPASCLPVCSVLPAQGLHLPHGGDSSLVQNQAAASSDPIPAASDKAGAEPPSFPLPTAE
SNSSPAPPEGSTDSEKLASSGCLTDHDGDEHKLYPRQSFSVQVNTHLSPIAARRHVLSTK
PVRRELLSSPLDFLPRAAPRPPPLTPSAPKQATTHTEHRSPVQARTPYQSSPFASEKAAS
QCLLDALLITPITQAPPLRLRRKKKRRSASELHLPKNKRVSWHQSAAEEGDPLLSSPVNA
VYVFSEEGEEPELNSHESAVVKTMTKGPATIQGHGPRTGLITPSFGMKGNGSASVPRGPV
PARPLPQPHPKDEDTLVQKAEHIPAGTRTPMCAHCNMVIRGPFLVAMGKSWHKEEFNCAH
CRTSLADLGFVEEQGSVYCEHCYEDFFAPTCSRCQAKILGEVINALKQTWHVYCFLCACC
QQPIRNNTFHLEDGEPYCEQDFYNMFGTGCHGCEFPIEAGDKFLEALGYTWHDTCFVCAV
CCTTLEGQTFFSKKDKPLCKKHAHTLKI
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaactacagcgtcacactcgtaggccctgccccctggggcttcaggctgcag
ggagggaaggacttcaacatgcccctcaccatctccaggctgacagatggcgggaaggcg
gctaaaggtggcattggtattggagacatggttctgtctattgacggcatcgccacggag
ggcatgaaccacctggaggcccagaacaagatcaagagctgcactggcaaccttagcctc
accctgcagaaggccgccagtgttcctaaagcttctcctcctcctgtggcaccaaagggc
gacagatcagacatcataaaaccagtggctctcacttatccccctccaccacctcatccc
caccctcactcctccagcccctccatcacccaccacaacaaggccccccgaccttatggg
ggctgtgcatcagagagcgaataccccccctcacagtcccctttcactcccttcatccca
tcaccatcctctgccttcactcctgcctcctcccacgccagctctcctcttcctcctcct
ccacctcctgtctcttacccatcctcttcctcctcctcctcctcccctcctgtcctcgtt
gcaccccagccgtcagtgtataacacaccaatcaacctctactccaccgagaacgcgtgt
gaggtggccatggggcagaggcggggcctgttggagagtcagggtggagccttgcctttg
cagtttaatggagttcccaggaaacacattgtggacacagacatccatttttaccatgtg
cccactcatgctgatgccagcaggaagcgcataatggaggatacagaggactggcgtcca
cgtactggcaccacccagtccagatctttcaggattctggctcagatcaccggtaccgag
cgtgctcaagatgaggaagctgatgcagccaagaagacaaactgtctttctgaatctgag
acaaatggtggacaggtcagtgacagatctccaaagcatccatcatctgaccgagtagag
atttcaccctcagatgcaggagccaataacattgaccaaccacagccagattcaggctca
tcagcaagtcaggaacagccagaagagggtgcttcaatccccaactatgtcctcttttct
aaacctggcagcctcctaacatctcaacatcaagagaacagtgtgccatctacagcaccc
cttcacttggtcgccatcccaatgacatattcaagttctgttgacatgttttgtcaaata
cacccaactcatttgtctaacatgagctatcctttagctccggtgctagtgcctttaact
tacactggtccaagccaaatcccatcatctcatgcccaaaggccaaatgacacttctctg
gatgctttgtttatgccagccaacatcccacattttcttggaccgagtgctgttagtacc
cacactccagcatcctgtttacctgtttgtagtgtattacctgctcaagggctacacttg
ccacatggtggtgactcctcattagttcaaaaccaagcagcagcttcgtctgatcccatc
ccagctgcctcagataaagcaggtgcagagccaccaagctttccacttcccacagctgaa
agcaattcctctccggcaccaccagagggcagcacagactcagaaaagttagcatccagt
ggctgtttgactgatcatgatggcgatgagcacaaattatatcctcgacaaagtttctcg
gtccaagtcaatactcatctatctcctatagcagcacgtcgccatgtcctttccaccaaa
ccagtcaggagagagctcctgtcaagtcctctggacttcctgcctagagcagccccgcgt
ccccctcctctcacccccagtgcccccaaacaggccacaacacacactgagcaccgtagt
ccagtgcaggcgagaacaccttatcagagcagtccttttgcttctgaaaaggcagcgtct
caatgcttattggatgccctgctcatcactccaatcactcaagctccaccactacgcttg
aggaggaagaagaagcgtcgtagcgccagtgagctgcacctgcccaagaataagagggtg
tcgtggcatcagtctgccgcagaggagggagaccctctcctctcctctcctgtcaatgct
gtctatgtctttagtgaagagggagaggagccagaactcaacagccacgagtctgcagtt
gtcaagaccatgaccaaaggacctgccacaatccagggtcacggtccacggactggtttg
atcaccccatcttttgggatgaagggtaatggaagtgccagtgtcccgaggggtcctgtc
ccagcccgacctttacctcagccccaccctaaagatgaggacaccttggtccagaaggca
gaacacatccctgctgggactcgtacgcccatgtgtgcccactgcaacatggtcatcaga
ggcccatttctggtagcaatggggaaatcatggcacaaggaggagtttaactgtgcccac
tgccgtacatccctggcagacctaggttttgtggaagaacagggatcagtctactgtgaa
cactgctatgaagatttctttgctcccacatgcagccgctgccaggccaagatactgggg
gaggtgataaacgcgctcaaacagacgtggcatgtctactgctttctgtgcgcttgctgt
cagcagccaatccgaaacaacaccttccacctggaggatggggagccatactgtgagcaa
gacttctacaacatgtttgggactggctgccatggctgtgagttccccatcgaggctgga
gacaagttcctggaggcccttggttacacctggcatgacacctgctttgtctgcgccgta
tgctgcacaactctggaaggccagaccttcttctccaaaaaagacaaacctctatgcaag
aaacacgctcacacattgaagatatga
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