Plectropomus leopardus (leopard coralgrouper): 121946085
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Entry
121946085 CDS
T07454
Symbol
ddb1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03420
Nucleotide excision repair
plep04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121946085 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
121946085 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plep04121
]
121946085 (ddb1)
03400 DNA repair and recombination proteins [BR:
plep03400
]
121946085 (ddb1)
Ubiquitin system [BR:
plep04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
121946085 (ddb1)
DNA repair and recombination proteins [BR:
plep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
121946085 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
121946085 (ddb1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
121946085
NCBI-ProteinID:
XP_042346446
LinkDB
All DBs
Position
1:complement(3365593..3434500)
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AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTSKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLIQITSGSVRLVL
QESKALVSEWKEPQGRNISVAACNHTQVVLAVGRALYYLQILAGELKQISTTEMEHEVAC
LDITPLGEGGGESPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSSRVEIQDVSGTTSVVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFPQXEYALSMVSCRLGKDPSVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaactacgtggttacagcccagaaaccgacggcagtgaacgcctgcatcacc
ggtcacttcacctctgcggaggacctcaatctgctcatagctaaaaacacgcggttggag
atctatgtggtcacagcagaggggctgcggcccgtcaaggaggtgggcatgtatggaaag
attgctgtcatggagctcttcaggccaaagggtgaaagcaaagaccttctgttcattctc
acatccaagtacaacgcctgcatcctagaatacaaacagaacggggagagcatcgacatc
atcacccgtgcccacggcaatgtccaggatcgcattgggcgtccgtcagagacaggtatt
attggaatcgtagacccagaatgccgtatgatcggcctgcggctgtatgacgggttgttc
aaggtgatcccactggaccgggacaaccgcgagctcaaggcctttaacatcagactggag
gagctgcaggtcatcgacgttcacttcctgtacggctgccaggccccaaccgtctgcttc
atctaccaggacccccaggggcgccatgtaaagacctacgaggtttctctgagggagaag
gagttcaacaagggtccctggaaacaggagaacgtggaggctgaggcgtctatggtgatc
ccagtgccagagccatttggtggagctataatcataggacaagagtccatcacctaccac
aatggggacaaatacttggccattgcaccacccactatcaagcaaagcaccatcgtctgt
cacaaccgcgtggaccccaacggctctcgctacctgctgggggacatggagggacgcctg
tttatgctgctgttagagaaggaggaactaatggacgggacagtggcgctcaaagacctg
catgtggagctgcttggagagacatccattgctgagtgtctgacctacttggataacggt
gtggtgtttgtgggctccagactgggcgactcccagttagtgaagctcaatgtggacagc
aatgaccagggctcctatgtggcagtgatggagacgttcaccaatctggggcccatcgtg
gacatgtgtgtggtcgacctggagaggcagggccagggacagctggtgacatgctcgggt
gccttcaaggagggctctctccggatcattcgcaacggcattgggattcacgagcacgcc
agcatcgacctgccgggcatcaaaggtttgtggccactgcgctctgaggcaggcagagag
acagatgacatgctggtgctgtctttcgtgggtcaaacacgagtgttgatgctgagtggc
gaggaagtggaggagactgaacttcccggctttgttgacaaccagcagacattttactgt
ggcaacgtggcgcaccagcagctcattcaaatcacgtcgggctccgtgcgcctggtgctc
caggagagcaaggcattagtgagtgaatggaaagagccacagggcaggaacatcagcgtg
gctgcctgcaaccacactcaggtggtgctcgccgtgggacgagccctttactacctgcag
atcctggctggagagctcaaacagatcagtaccacagagatggagcacgaggtggcctgc
ctggacatcacgcctctcggggagggtggcggtgagtcaccactctgcgctgtgggactc
tggaccgacatttcggctcgtgtgctcaagcttccctgcttcacagccctgcacaaggaa
atgctgggcggagaaatcatccctcgctccatcctaatgaccacctttgaaggcagctac
tacctgctctgtgcgctgggagacggagcgctcttctactttggtctggacctgcagact
ggcgccctgagcgagcgtaagaaggtcacgctcggcacccagcccactgtgctgaggaca
ttcagatccctgtccacttccaacgtcttcgcctgctccgaccgacccactgtcatctac
tcctccaaccacaagctggtcttctccaacgtcaacctcaaggaggtcaattacatgtgc
ccactcaactccgagggctaccccgacagcctggctctggccaacaacagcactctgacc
atcggtactatcgacgagattcagaaactccacattcgcactgttcccctctacgagtct
cccaggcggatctgttaccaggaagtttcccagtgtttcggggttctctccagcagggtg
gagattcaggatgtgagcggcaccacatctgttgtgcgccccagcgcgagcactcaggct
ctctccagcagcgtgagctccagcaagctcttccccagcagcacttctccccacgagacc
tccttcggcgaagaggtggaggttcacagtctgctcgtcgtggatcagcacacctttgaa
gtcctccatgcccatcagttcccccagnntgagtacgccctcagcatggtgtcatgtcgt
ctgggaaaagacccatcagtgtattttatagtcggcaccgccatggtgtacccagaggag
gccgaacccaagcagggacgcatcattgtcttccactacactgacggtaagctgcaaacc
gtggctgagaaggaggtgaaaggagctgtctattctatggtggagttcaatggcaaactg
ctggccagcatcaatagcacagtccgtctgtacgagtggacggctgagaaggagctgagg
accgagtgtaaccactacaacaatatcatggctctctacttgaagacaaaaggagacttc
atcctggtgggcgacctgatgaggtccgtcctgctgctggcgtacaaacccatggagggc
aactttgaagagattgcgcgtgacttcaatcctaactggatgagtgcagtggaaatcctg
gacgatgacaacttcctgggagcagagaatgcattcaatctgtttgtctgccagaaggac
agtgcggccaccacagacgaggagcggcagcacctgcaggaggtgggggtcttccacctc
ggggagtttgtaaatgtcttctgccacggctcgctggtgctgcagaacctgggcgagagc
tccacgcccacccagggctccgtgctcttcggcaccgttaacggcatgatcggtttggtg
acgtccctgtccgagggctggtacagcctcctcctggacctgcagaatcgcctcaacaag
gtcatcaagagcgtgggcaagatcgagcacagcttctggaggtccttccacacggagcga
aagacggagcaggccacgggattcatcgatggggatctgattgagagcttcctggatctc
ggccgagccaagatgcaagaggtcgtcagcactctgcagatcgatgacggcagcggcatg
aagcgtgaagccacagtggacgaggtcattaagattgtggaggagctgacaaggatccac
taa
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