KEGG   Plectropomus leopardus (leopard coralgrouper): 121946779
Entry
121946779         CDS       T07454                                 
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a
  KO
K19719  collagen type II alpha
Organism
plep  Plectropomus leopardus (leopard coralgrouper)
Pathway
plep04510  Focal adhesion
plep04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:plep00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    121946779 (col2a1a)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    121946779 (col2a1a)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:plep00536]
    121946779 (col2a1a)
Glycosaminoglycan binding proteins [BR:plep00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   121946779 (col2a1a)
SSDB
Motif
Pfam: Collagen COLFI VWC SNARE Amnionless VWC2L_2nd
Other DBs
NCBI-GeneID: 121946779
NCBI-ProteinID: XP_042347460
LinkDB
Position
8:26094052..26122851
AA seq 1487 aa
MFSFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGGCIQDGQQYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPLIPSGECCPICPADASAPIETIGAKGQKGEPGDIADVVG
PQGPPGPMGPPGEQGARGEAGAKGDKGNPGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGSPGEAGEPGPAGAMG
PRGPPGPSGKPGSDGEGGKPGKSGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ENGAAGAKGEAGASGENGAPGPMGPRGLPGERGRSGAAGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGAKGEAGPTGARGAEGPQGPRGEGGTPGSPGPAGASGNPGTDGIPGAKG
SAGAAGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPAGPQG
APGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGVPGERGAPGAAG
PKGAQGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPAGAAGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEAGKPGEKGLVGRPGLRGLPGKDGETGSSGPPGPAGPAGERGEQGQPG
PSGFQGLPGPSGAPGEAGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGAQGLQGPRG
LPGTPGSDGPKGAIGPAGAPGSQGPPGLQGMPGERGVGGIPGPKGDRGDNGAKGLEGAPG
KDGSRGLTGPIGPPGPAGPNGAKGETGPTGVTGAPGSRGAPGDRGEVGPPGPAGFAGPPG
ADGQPGAKGELGESGQKGEAGAPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG
AAGRVGPPGPNGNPGSAGPAGPAGKDGPKGARGDGGLPGRQGDAGLRGPPGQQGEKGEPG
EDGPPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGSSGPSGDRGPPG
PVGPPGLTGPAGETGREGTPGSDGPPGRDGAAGVKGERGNTGPAGAPGAPGAPGAPGPVG
PLGKQGDRGESGAQGPAGPSGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQG
LPGPPGPAGDSGAAGPAGPSGAKGPSGPAGPAGKDGANGQPGPIGPPGPRGRSGETGPAG
PPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLK
SLNSQIENLRSPDGTQKNPARTCRDLKLCHPEWKSGTYWVDPNIGSTADAIKVFCNMETG
ETCVTPSIAEVPKKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGPVANAGSVQLTFLRL
LSTEASQNLTYHCKNSVAYMDQATGNLKKALKLQGSNDVEIRAEGTSRFTYSVLEDGCKK
HTDRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq 4464 nt   +upstreamnt  +downstreamnt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatcccaagttgtttta
ctatccgtggtcagatgtcaggaagaggatgaccaggaggcaggtggctgcatccaggac
ggccagcagtataatgataaggatgtgtggaagcccgagccgtgtcgtatctgtgtgtgc
gacagcggagcggttctgtgtgatgagataatctgcgaggagatcaaagaatgcgccaac
cctctcatcccatctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt
gagacaattggtgcaaagggccagaaaggtgaaccaggagatattgcagatgttgtagga
ccacaaggaccaccaggccctatgggccccccaggtgagcagggagcacgtggagaagct
ggcgccaagggtgataagggaaatccaggacctcgtggaagagacggtgagcccggcacc
cccggaaaccccggaccccctggcccacctggcccacctggactcggagggaactttgct
gctcagatggctggaggttttgatgagaaggctggaggcgctcagatgggtgtgatgcag
ggaccaatgggtcctatgggtcctcgtggtccccctggaccatctggagctcctggacca
caaggtttccaaggttcccctggagaggctggagagcctggtccagctggagcaatggga
cctcgcggacctcctggaccttctggaaaacccggaagtgatggtgaaggtggcaaacct
ggaaaatctggtgagcgtggacctgcagggcctcagggagctcgtggattccctggaact
cctggacttcctggaatcaaaggacacagaggtcatcctggtctggatggagctaaggga
gaaaatggtgctgcaggagccaagggtgaggctggtgcttctggagagaacggcgctcct
ggacccatgggcccacgtggtctgcctggtgagagaggacgttctggagccgctggagct
gcaggtgcccgtggaaatgatggtttgccaggtcctgctggtccacctgggcctgttggt
cctgctggagctcccggtttcccaggatctccaggagccaagggagaagctggtccaact
ggagcccgtggagctgagggaccacagggaccccgtggagagggtggtaccccaggatct
cctggacctgccggagcatcggggaaccctggtactgatggtattcctggagctaaagga
tctgctggtgctgctggtattgctggtgctcctggattccccggtccccgcggcccacct
ggaccacagggagctacaggacctctggggccaaagggacagtctggagaccctggtctt
cccgggttcaaaggtgaagctggacccaagggagagcttggcccagctggtccccaaggt
gctcctggccctgctggtgaagagggaaagagaggagccagaggagagcctggagctgct
ggaccactcggacctccaggagagagaggagctcctggtaaccgtggtttcccaggtcag
gacggtcttgctggagctaagggagttcctggtgagcgtggtgctcctggtgctgctggg
cccaaaggtgctcaaggagaccctggacgcacaggagagtccggcctccccggagccaga
ggtcttactggtcgtcctggagatgctggtcctcaaggcaaagttggacctgctggtgcc
gctggtgaggatggtcgccccggtccacctggtcctcagggagcccgcggacagcctgga
gtgatgggattccctggaccaaagggagccaacggtgaagctggaaagccaggagagaag
ggtcttgtgggacgtcctggtctgagaggtctgcctggaaaagatggtgagactggttct
tctggacctcctggccccgctggacccgctggagagagaggagagcaaggacagcctgga
ccctctggcttccagggtctgcctggaccatctggtgccccaggagaggctggaaaacct
ggagaccagggtgttcctggagagggcggagctcctggtgctgttggacccagaggtgaa
cgtggtttccctggtgagaggggtggtgctggagctcagggtctgcagggacctcgtgga
cttcctgggacacctggaagtgatggacccaagggagccattggaccagctggcgctcct
ggatcccagggaccccccggcctgcagggtatgcccggagagagaggagttggtggtatc
ccaggacccaagggagacagaggtgacaacggagccaaaggacttgagggagctcctgga
aaggacggtagtagaggtctgactggtcccattggtcctcctggcccagctggacccaat
ggcgccaagggtgagactggacccactggtgttactggtgctcctggttctcgtggtgct
cctggtgaccgtggtgaggtcggtcctcctgggcctgctggttttgctggacctcctggt
gcagatggtcagcctggtgctaagggagagcttggtgagtctggacagaagggagaagct
ggtgcccctggacctcagggaccatctggagctcctggacctgtgggacccactggtgtg
tctggacctaaaggagcacgtggtgctcagggagctcctggtgctactggtttccctggt
gctgctggcagagttggacctcctggccctaatggtaaccctggctctgctggccctgct
ggtcctgctggtaaagacggacctaagggtgctcgtggtgatggcggactcccaggaaga
cagggagacgctggacttcgtggacctcctggccaacagggagagaagggagagcctgga
gaggatggaccacctggtgctgatgggccctcaggtcctcagggtctggctggatctcgc
ggtattgttggtttgcctggtcagcgtggagagagaggtttccctggtctccccggacca
tctggagagcctggtaaacagggaagttctggtccatctggcgaccgcggacctcctgga
cctgtgggaccccctggacttactggacctgcaggagagactggaagagagggtacccct
ggatcagatggacctcctggtagagatggagctgctggagtcaagggagagagaggtaac
accggtcctgctggcgcccctggagctcctggtgcccccggtgcccccggacctgtcgga
cccctcggcaagcagggagacagaggagagagcggtgctcaaggacctgcaggaccttct
ggacccgctggagctagaggaatggctggaccccaaggaccacgtggagacaaaggagag
gctggtgagactggagagagaggacagaagggtcaccgtggcttcactggtctgcagggt
cttcctggaccccctggtcccgctggagactctggagctgccggacctgctggaccaagc
ggagcaaagggaccatctggacccgctggacctgctggcaaagacggtgcaaatggacag
cctggccccattggaccccctggacctcgtggacgttctggagaaactggtcctgctggt
cctcctggtaacgctggaccccctggccctcctggtcctcctggccccggcatcgacatg
tctgccttcgctggtctgggtcagactgagaagtcccccgatcctctcaggtacatgagg
gccgatgaggcctccagctccctgaggcagcacgacgtggaggtcgactccactctcaag
tccctcaacagccaaatcgagaacctgcgtagccccgacggcacccagaagaaccccgct
cgcacctgcagagacctgaagctgtgccaccctgagtggaagagcggtacctactgggtg
gatcccaacattggcagtacagccgacgccatcaaggtcttctgtaacatggagactgga
gagacctgcgtcaccccaagcatcgccgaggtaccaaagaagaactggtggaccagcaag
agcaaggaccgcaaacacgtctggtttggagagaccatgaatggaggattccacttcagc
tacgctgaggacggccctgtcgccaacgccggcagtgtccagctgaccttcttgaggctt
ctgtccaccgaagcgtcccagaacctcacttaccactgcaagaacagcgtcgcctacatg
gaccaggccacaggcaacctgaagaaggctctgaagctgcagggctccaacgatgtggag
atccgcgcagagggcaccagccgcttcacatacagcgtgctggaggacggctgcaagaaa
catacagaccggtggggcaagactgtctttgagtacaaaacacagaaaacctcccgtctg
ccaatcgtggacattgctcccatggacatcggaggagcggatcaggagtttggagtggaa
gtaggcgcagtctgcttcttgtaa

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