Plectropomus leopardus (leopard coralgrouper): 121946859
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Entry
121946859 CDS
T07454
Name
(RefSeq) embryonic polyadenylate-binding protein-like
KO
K13126
polyadenylate-binding protein
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03015
mRNA surveillance pathway
plep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121946859
09123 Folding, sorting and degradation
03018 RNA degradation
121946859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plep03019
]
121946859
03041 Spliceosome [BR:
plep03041
]
121946859
Messenger RNA biogenesis [BR:
plep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121946859
mRNA cycle factors
Stress granule specific factors
121946859
Spliceosome [BR:
plep03041
]
Complex C
Other components
Complex C specific factors
121946859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_Nup35
RRM_5
RRM_10
RBD_DEAH11
RRM_3
RBD_RDR6
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
121946859
NCBI-ProteinID:
XP_042347593
LinkDB
All DBs
Position
8:23127140..23138150
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AA seq
626 aa
AA seq
DB search
MNSSGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDEKGSKGYGFVHFETQEAANRAISTMNGMLLNDRKVFVGHFKSRKERE
VEFGTKAMKFTNVYVKNFGEDYTDEKLKELFSAFGRTLSVRVMKDERGRSRGFGFVNYAN
HEDAQKAVNEMNGKELNGKIIYAGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKN
LDDSIDDERLRKEFAPYGTITSAKVMTDGSQSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRREERKAILTNKYMQRLATLRTMTSPIIDSYQQAGYYMTVPQPPTRSFYNH
NAVSNMRPVPRWTGQPPRLQGPYSNQFVGTPVPRRGSAPIATVRQASTQAPRVMSSTQKT
NNIGTQTVGGRTDVPSMTRGGQYKYSSAVRNVQQVVTVPAPMQRLQAVPAPVMDPPAKIQ
AHEPLTASMLAAAPLMDQKQLLGERLYPVIHSLHPHLAGKITGMLLEIDNSELLHMLETP
ESLHSKVDEAIAVLQAHQAKECSPKK
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtagtggaccagcgtatcccctcgcctctctgtatgtgggggatctgcatcct
gacgtcacagaggccatgctctaccagaaattctctcctgctggacccatcatgtcgatc
cgtgtgtgccgtgacatcatcacccgcagatctctgggatatgcctacataaacttccag
cagcctgctgatgcggagtgcgccctagatacaatgaactacgatgtcatcaagggccgg
cctatccgcataatgtggtctcagcgtgaccctggactcaggaagtctggtgtggggaac
atcttcattaagaacatggatgagtctattgacaacaaggctctgtatgacaccttctct
gcctttggaaatattttgtcctgcaaggttgtttgtgatgagaaaggatccaaaggctat
ggatttgttcactttgagactcaagaggctgcaaaccgggccatcagtaccatgaatggg
atgctgctaaatgataggaaagtttttgttggccacttcaagtcccgcaaggaaagagag
gtggagtttggcaccaaagctatgaagttcaccaacgtttatgtcaaaaactttggtgaa
gactacaccgatgaaaaactcaaggaactcttctctgcatttgggaggactctcagtgtg
cgggtgatgaaggatgagaggggccgctcacgaggatttggctttgtaaactacgctaac
cacgaggatgctcagaaggcagtgaatgaaatgaacgggaaggagctaaatgggaaaatc
atctacgctggtcgggctcagaagaggctggagcgccagggagagctcaaacgcaagttc
gaccagatcaaacaggaccgcatccagcgctatcagggggtgaatctgtatgtgaagaat
ctggacgacagcatagatgacgagagactccggaaggaatttgccccttatggcaccatc
accagtgccaaggtcatgacagatggctcccaaagcaagggcttcggctttgtctgtttc
tcgtcaccagaagaagcaacaaaagcagtgactgaaatgaacgggagaattgttgcgacc
aagccgctgtatgtggctctggctcagcggagggaggagcggaaagcgatcctgaccaat
aaatacatgcagagactcgctaccttgaggaccatgacaagtccaatcattgactcgtac
cagcaggctggatactacatgactgtaccacagcctcccactcgctccttctacaaccac
aatgctgtgagcaacatgagaccagtgcctcgatggacaggacaacctccaagactacag
ggcccctactctaaccagtttgtgggtacccctgttccccgacgtggatcagcccccatt
gctacagtcagacaggcctccacccaggctccacgtgtcatgagctccacacaaaaaaca
aataacattggcacccagactgtaggagggcgcactgacgtgcccagtatgaccagaggt
ggtcagtacaagtattcatctgcagtgagaaatgtccaacaggttgttactgtccctgca
cccatgcaaaggctacaggctgttcctgcacctgtgatggatcctccggcaaagattcag
gcccatgagccgctcactgcctcgatgttggctgcagctccactaatggatcagaaacag
cttcttggggagcgattgtacccagtgattcattcccttcatccacacctggctggaaaa
atcactgggatgctgctggagatcgataactcggagctgctgcacatgctggagacgccc
gagtccctgcactccaaggttgatgaggcgatcgcggtcctgcaggctcaccaggcgaag
gagtgctctcccaagaagtga
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