Plectropomus leopardus (leopard coralgrouper): 121947716
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Entry
121947716 CDS
T07454
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03022
Basal transcription factors
plep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121947716 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
121947716 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plep03021
]
121947716 (ercc3)
03400 DNA repair and recombination proteins [BR:
plep03400
]
121947716 (ercc3)
Enzymes [BR:
plep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
121947716 (ercc3)
Transcription machinery [BR:
plep03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121947716 (ercc3)
DNA repair and recombination proteins [BR:
plep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121947716 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
GATase_2
Motif
Other DBs
NCBI-GeneID:
121947716
NCBI-ProteinID:
XP_042348742
LinkDB
All DBs
Position
1:complement(13720512..13729573)
Genome browser
AA seq
782 aa
AA seq
DB search
MGKKDKGDRDKKSRKRFYEEEEDEEEVVGNDTQEAIPAAAGKQVDESSTKLDEYGAKDYR
LQMLLKNDHSARPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPNHIHEYKLTAYS
LYAAVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFP
DVIQRLLQDNVIRECRLRTADGADTELITEVIHSKSAISKTIEERGGTSTSQQPGDGQAS
TQQVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRND
TVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAERVMEWMRSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKMGLTATLVREDDKIVDL
NFLIGPKLFEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
FRACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEGDLMFSTREEQQQLLQKVLAAS
DLDAEEEVVVEVGGQPKFSRRTGTMSSMSGADDTVYMEYQNRGSKASAMSKSVHPLFKRF
RK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaaaggataaaggagatcgcgacaagaagtccagaaagcgtttctatgaggag
gaggaagatgaagaggaagtggtgggtaacgacactcaggaggcgatacctgctgctgca
ggaaaacaagtggatgagtccagtacaaaactggatgaatatggagccaaagactaccgt
cttcagatgctgctgaagaatgatcactctgcacgccccctctgggtggctccagatgga
cacatctttctggaagccttctcaccagtgtacaagtatgctcaggattttctggtggcc
atcgcagagcctgtgtgcaggcctaaccatatccatgagtacaagttgacggcctattcc
ctgtacgcagctgtcagtgtggggctgcagacctctgatattgtggagtacctgcagaaa
ctcagcaagacatctgtgcctgatggaattgtgcagtttattaagctctgcacggtgagc
tacggcaaagtcaagctggtgctcaagcacaataggtattttgttgagagtgccttccct
gatgtgatccagcggcttctgcaggacaacgtgatccgtgagtgtcgtctccgcactgca
gacggagcagacactgagcttattactgaagtcatccacagcaagtcagcgatttccaag
actattgaggaaagggggggcacttccacctcacagcagcctggcgatggacaagcttca
acccagcaggtcccagaggacatcttcagctactatgagcagatggataaagaagaagaa
gaagaggaagagactcagacagtgtcctttgagatacgccaggagatgattgaagagctg
cagaagcgttgtattcagctcgagtaccccctcctagcagagtacgactttcgcaatgat
acagtcaacccagacatcaacattgacctgaagcccactgctgtgttgcgcccctaccag
gaaaagagtctgcgcaagatgtttgggaacggacgtgctcgctctggggtcattgtgctg
ccctgcggagcgggcaaatctctggtgggcgtgacagcagcgtgcactgttcgtaaacgc
tgcctcgtgttggggaactcctcagtgtcagtcgaacagtggaaggctcagttcaagatg
tggtccacaatagatgactctcagatctgccgcttcacctctgacgccaaggacaagccc
atcggctgctcggtggccatcagcacctactctatgctgggtcacaccaccaagcgctcc
tgggaggctgagagagtcatggagtggatgcggagccaggagtgggggctcattatcctg
gatgaggtgcacacaatccctgccaagatgttccgtcgtgttctgaccattgtccaggca
cactgcaaaatgggtctcacggccacactggtcagagaagatgacaagattgtggatctg
aacttcctaattgggcctaaactatttgaggcgaactggatggaactgcagaataatggc
tacattgctaaagtccagtgtgctgaggtgtggtgccccatgtctccagagttttacaga
gaatatgtagccattaagacgaagaagcgcatcctgctttatacaatgaaccccaataag
ttccgcgcctgtcagtttctcattcgcttccacgagcggcgcaacgacaagatcatcgtc
tttgctgacaatgtgtttgccttgaaggaatacgccattcgcctaaacaagccgtacatc
tatggcccaacctctcaaggggaaagaatgcagattttacagaacttcaaacacaacccc
aaaatcaacaccattttcatatccaaggttggagacacctcatttgacttgccagaagcc
aatgtcctgatccagatttcctcccatggtggatctcgcagacaagaggcccagaggctg
ggcagagtgttacgagccaagaaaggaatggtagcagaagagtacaatgcatacttttac
tcgctggtatctcaggacacccaggagatggcttactccaccaagaggcagaggttcctg
gtggaccagggatacagctttaaggtgatcacaaagttggcaggcatggaggagggggac
ttaatgttctccacaagagaagagcaacagcagctgctccagaaggtcctcgctgcctca
gacctggatgctgaggaggaagtggtggtggaggtgggcggacaaccaaagttctcaagg
cgaacaggcaccatgagctccatgtcaggtgcagatgacaccgtctacatggaatatcag
aatcgaggcagcaaagcgtccgcaatgagcaagagcgtgcatccactattcaagcgcttc
agaaagtag
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integrated database retrieval system
