Plectropomus leopardus (leopard coralgrouper): 121947994
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Entry
121947994 CDS
T07454
Symbol
thoc3
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 3
KO
K12880
THO complex subunit 3
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03013
Nucleocytoplasmic transport
plep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121947994 (thoc3)
09122 Translation
03013 Nucleocytoplasmic transport
121947994 (thoc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plep03019
]
121947994 (thoc3)
03041 Spliceosome [BR:
plep03041
]
121947994 (thoc3)
Messenger RNA biogenesis [BR:
plep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
121947994 (thoc3)
Spliceosome [BR:
plep03041
]
Complex C
Other components
EJC/TREX
121947994 (thoc3)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121947994 (thoc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
Beta-prop_EML_2
WD40_Prp19
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WDR55
ANAPC4_WD40
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_WDR3_2nd
Beta-prop_Aladin
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
WD40_RFWD3
eIF2A
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
RMC1_N
Beta-prop_WDR36-Utp21_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Tricorn_2nd
Beta-prop_HPS5
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_ACSF4
PD40
Beta-prop_EIPR1
B-prop_COPA_B_2nd
Beta-prop_NUP159_NUP214
RAB3GAP2_N
Beta-prop_Nup120_160
WD_LRWD1
Beta-prop_NWD2_C
Beta-prop_ELP1_1st
DPPIV_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
121947994
NCBI-ProteinID:
XP_042349150
LinkDB
All DBs
Position
9:complement(34375215..34381148)
Genome browser
AA seq
323 aa
AA seq
DB search
MAASQCSQYYQEMQDSFRTNNKSREFPAHTAKVHSVAWSCDGRRLASGSFDKTASVFLLE
KDRLVKENNYRGHSDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCIATDNTKGENI
NICWSPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQFRXEISWNNDNDMFFLTNGNVCVRV
RSYPELKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDVEELVCVRCFSRLDWP
VRTLSFSHDGRMLASASEDHFIDIAEVETGEKLWEVQCDSPTFTVAWHPKRPLLAYACDD
KEGKYDNNREAGTVKLFGLPNDS
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctcccagtgctcccagtactaccaggagatgcaggacagcttcaggaccaac
aacaagagccgagagttcccggctcacaccgccaaggtgcactcggtggcctggagctgc
gacggccggaggctggcgtccgggtccttcgacaagaccgcgtccgtcttcctgctggag
aaggaccggctggtgaaggagaataactaccggggtcacagcgacagcgtggatcagctc
tgctggcatccgaccaaccccgatctgttcgtcacggcgtccggagacaagaccatccgc
atctgggacgtccgcaccaccaagtgcatcgccaccgacaacaccaaaggagagaacatc
aacatctgctggagtcctgacggtcagaccatcgccgtggggaacaaagacgatgtggtg
accttcatcgacgccaagacgcatcgctccaaggccgaggagcagttcagantcgagatc
tcctggaacaacgacaacgacatgttcttcctcaccaacggcaatgtgtgtgtgcgcgtg
cgcagttatccggagctgaagccgatccagtccatcaacgctcacccatccaactgtatc
tgcatcaagttcgacccgacaggaaaatactttgccacaggaagtgccgacgcgctggtg
agcctgtgggacgtggaggagctggtgtgtgtgcgctgtttctccaggctggactggccc
gtgaggacgctgagcttcagccacgacggcaggatgttggcctcggcctccgaggatcac
ttcatcgacattgcagaggtcgagacgggagagaagctgtgggaggtccagtgtgactcc
ccgaccttcaccgtcgcctggcacccaaagaggccgctgttggcgtacgcctgcgacgac
aaggagggaaaatacgacaacaaccgggaggccggcaccgtcaaactgttcggactcccc
aacgactcctga
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