Plectropomus leopardus (leopard coralgrouper): 121948021
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Entry
121948021 CDS
T07454
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03008
Ribosome biogenesis in eukaryotes
plep03013
Nucleocytoplasmic transport
plep03015
mRNA surveillance pathway
plep05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121948021 (nxf1a)
03015 mRNA surveillance pathway
121948021 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
121948021 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121948021 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plep03019
]
121948021 (nxf1a)
03009 Ribosome biogenesis [BR:
plep03009
]
121948021 (nxf1a)
Messenger RNA biogenesis [BR:
plep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121948021 (nxf1a)
mRNA cycle factors
Stress granule specific factors
121948021 (nxf1a)
Ribosome biogenesis [BR:
plep03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
121948021 (nxf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_8
UBA_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
121948021
NCBI-ProteinID:
XP_042349190
LinkDB
All DBs
Position
9:20372453..20386443
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AA seq
683 aa
AA seq
DB search
MDRVTFCQRGYPNLAVVARVVNEDRGDFTVRREVRRAGYMVRRGETTCWAPPWTSNYVTS
KHDDRTAPQFRNRKGRGSHKGRSYDRSRRDRQRGGHAGGFGGPGPRSRLDDADPDVTMSD
GSQDGGPHNRFTPYGRPMRKGGDGRFDRDRRQGKGGGGGRGGFRGDRFGGNGGTGKNRSG
WFKVTIPHGRKYDKKWLLTALQNICSVPFTPVQYHVDHNRAHFYVDDSSTAGALHKCSHK
ITDTDGYKVEVHINPSAPPSFLLSDLKPEHLEHLKQCMAKRFDGSQQALDLNNIRTDPDL
ASQNIEVILNRKTNMEAVIKIIEENIPELTCLNLSNNRIHKLDELADLISKTPNLKTLNL
SHNELKTDRELDKVKGLKLVELWLNRNPLCDLFKDQASYISAVRQRFPRLLKLDGHDLPP
PIGFVVEAPTTIPPCNGSCFGSDEIKALILRFLQQYYSIYDSGDRQPLLDAYHDGASLSL
TTPYSTQNPSRSSLGEYHKDTRNLKRIKDSTIRFRLLKHTRLNVVAFLNELPKTQHDIAS
FTVDVNTYTNTLLSFTVSGVFKEVAVDGKSRESTMAFSRVFITVPAGNSGLCIVNDQLFI
RMATTEEIRRAFVAPAPTPSSSPVPTLTAPQQEMLTAFSLKSGMNLEWSQKCLQDNEWDF
NRAAQIFTQLKTDGKIPDVAFLK
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggaccgagtgactttctgtcagaggggctacccgaacctcgccgtggtggcacgtgtg
gtgaatgaagaccgaggggactttactgtgaggcgagaggtcaggagagctggttacatg
gtccgaagaggtgaaactacatgttgggcgccaccctggacatctaattatgttacttca
aagcatgatgacagaaccgcaccacagtttcgcaaccgtaaaggccgaggatcccacaag
ggtcggtcgtatgacaggtcccgcagagaccgccagcggggcggccatgctggaggcttc
ggaggtccagggccgcggtctaggcttgatgatgctgatccagatgtaactatgagtgac
ggctctcaggacggcggcccccacaacagattcaccccgtatggaagacctatgcggaaa
ggaggagatggacgctttgacagagacaggcggcaaggcaaagggggaggaggtggaaga
ggcggcttcagaggagaccgatttggaggaaatgggggaactgggaaaaaccggtctggc
tggttcaaagtaacgataccacatggaagaaaatatgacaagaaatggttattgacggct
cttcagaacatctgttcagttcctttcacacctgtgcagtaccatgttgaccataacagg
gcccatttctatgtggatgattcctctactgctggtgctttgcacaaatgttctcacaag
atcacggacacagacggttataaggtggaagtacatatcaaccccagtgctccgccgtcc
ttcctcctctctgacctgaagcctgaacacctggagcatctgaagcaatgcatggcaaaa
cgttttgatggctcccagcaagcactagacttaaacaacatccgaacagacccagatctg
gcgtcccagaatattgaagtcattttgaacaggaagacgaacatggaagctgtcatcaag
attattgaagaaaacattccagagctgacatgtttgaacctgagtaacaatcgtattcac
aaacttgatgaactcgccgatttgattagcaagacaccaaatctgaagaccctcaacctt
tcccacaacgagctgaagaccgaccgggagctggacaaggtgaaaggcctgaagctggtg
gagctgtggctgaacaggaaccctctctgtgacctcttcaaggatcaggcctcgtacatc
agtgctgtgcggcagaggtttccccggcttctcaaactggatggtcatgaccttccccca
cccattggatttgttgtggaggcacccaccactatccccccctgcaacggcagctgtttt
ggctcagatgaaatcaaggccctcatccttcggttcttgcaacagtactacagtatatat
gactctggggacagacagccactcctagatgcttaccatgatggagcatcgttatccctc
acaacaccgtactccacccagaacccctcccggagcagtctgggagagtatcacaaagac
actcgaaacctgaagaggatcaaagactccacgattcggtttcgacttctgaagcacacg
cgactgaacgtggttgctttcctcaacgagctgcccaaaactcaacacgacatcgcctcc
tttactgtcgacgtaaacacctacacgaacacactactatcattcacagtgagcggagtc
ttcaaagaagtcgctgttgatggtaaatctcgagagtccaccatggctttctcgagagtt
ttcatcacagttccagctgggaattctggtttgtgcatcgtgaatgaccagcttttcatc
cggatggctacgactgaggaaatccgccgcgcctttgttgctcccgccccgactccatcc
tccagccccgtccccaccctcactgcaccgcagcaggagatgctcacagccttctcgctc
aagtctggcatgaacctggaatggtcccagaagtgcctgcaagacaacgagtgggacttc
aacagagcggcacaaattttcactcagctaaagacggacggcaagatccctgatgttgcg
ttcctaaaatga
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