Plectropomus leopardus (leopard coralgrouper): 121948118
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Entry
121948118 CDS
T07454
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03020
RNA polymerase
plep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121948118
09124 Replication and repair
03420 Nucleotide excision repair
121948118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plep03021
]
121948118
03400 DNA repair and recombination proteins [BR:
plep03400
]
121948118
Enzymes [BR:
plep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121948118
Transcription machinery [BR:
plep03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
121948118
DNA repair and recombination proteins [BR:
plep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
121948118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
121948118
NCBI-ProteinID:
XP_042349327
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All DBs
Position
9:complement(34336062..34348356)
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AA seq
1183 aa
AA seq
DB search
MYDQDEDNQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFXALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVDKQTTTHLEEETVMLAMTPGTNKQTHDLQEKGVAYCSTYTHCEIHPSMILGVCASIIP
FPDHNQSPRNTYQSAMGKQAMGVXITNFHVRMDTLAQVLYYPQKPLKHTPVHNTYLRFRE
LPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEK
PTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRD
CSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVLDSSDGDKFASRHGQKGTCGIQYRQ
EDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKV
SNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILN
RQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTR
THTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccaggacgaagataatcaatatgatgaggacgaggatgaaattactccagat
ttgtggcaggaagcgtgctggatcgtcatcagctcttactttgacgagaagggtctggtg
cggcagcagctggattctttcgatgagttcatccagatgtcggttcagaggatcgttgag
gacgctccgcccatcgacctgcaggctgaagcccagcacacctcaggagaggtggaggag
ccgcctcgttacctgctcaagtttgagcagatctacctgtccaagcccacccactgggag
agagacggcgcgccgtcacccatgatgcccaacgaggccagactacgaaacctcacgtac
tcggcgccgctgtacgtggacatcacaaagacgatcataaaggagggcgaggaccagctg
cagactcagcaccagaagaccttcatcggaaaaattcccatcatgctccgctccacctac
tgtctgctgagcggcctgacggatcgagacctgtgcgagctcaacgagtgtccgctcgac
cccggaggttatttcatcatcaacggttccgagaaggtgctgatcgctcaggagaagatg
gcgaccaacacagtgtacgtgtttgctaagaaggactcgaagtacgcgtacaccggagag
tgccggtcctgtctagagaactcgtcccgccctaccagcaccatatgggtcagcatgatg
gcccgaggaggacagggtgtgaagaagagtgccatcggtcagaggatcgtgtccacgctg
ccgtacatcagacaggaagtgcccatcatcatcgtgttcngggcgctgggcttcgtgtcg
gacagagacatcctggaacacatcatctacgacttcgatgacccagagatgatggagatg
gtgaagccgtctctagacgaggcgtttgtgattcaggagcagaacgtggcgttgaacttt
atcggctccagaggagcaaaacctggagtgacaaaagaacgaagaatcaaatacgccaaa
gaagtcctgcagaaagagatgctgccgcacgtcggagtcagcgacttctgcgagaccaag
aaggcctacttcttagggtacatggtccacaggttgctgctcgcggctctcggcagacgt
gagctggacgacagagatcactatggcaacaagaggctggacctggccgggccgctgttg
gccttcctgttcagaggcatgtttaagaacctgctgaaggagatcaggatttacgcccag
aagttcatcgacagaggaaaagacttcaatctggagctcgccattaaaacccgaatcatc
tcagacggcctcaagtactcgctggccaccgggaactggggcgacgtgaagaaggctcac
caggcccgagcgggcgtgtcccaggtgttgaaccgtctgacgttcgcttcgactttgtcc
cacctgcgccgagtcaactctcccatcggcagagatggcaaactggcaaaaccccgacag
ctgcacaacacactgtggggaatggtgtgtccggccgagacacccgagggtcacgctgtg
ggcctggtgaagaacttggccctcatggcctacatctctgtgggctcccagccgtccccg
atcctggagtttctggaggagtggagtatggagaacctggaggagatctcacctgctgcc
atcgcagatgccacgaagatctttgtgaacggctgctgggttggaatccacaaagatccc
gaacagctgatgaacactctgaggaaactccgcagacagatggacatcatcgtgtccgag
gtgtccatgatcagagacatcagagaacgagagatcagaatctacacggacgctggacgg
atctgcaggccgctgctgatcgtcgagaaacagaaactgctgctgaagagacgacacatc
gaccagctgaaggagagagagtacaacaactacagctggcaggacttggtggcgagcggc
gtggtggacaaacaaacaacgacacatctagaggaggagacggtgatgctcgccatgacc
ccaggtacaaacaaacaaacacacgatctccaggagaagggcgtggcttactgctccacc
tacacgcactgcgagatccacccgtccatgatcctcggagtctgcgcctccatcatcccc
ttccccgatcacaaccagtctcccaggaacacctaccagtctgctatgggcaaacaggcc
atgggcgttnncatcaccaacttccatgttcggatggacacgctcgctcaggtgttgtac
taccctcagaaaccgctgaaacacacacctgtacataacacatacctgcgcttcagagag
ctgcctgcaggtatcaactccatcgtggcgatcgcctcgtacacgggatacaaccaggag
gactcagtgatcatgaaccgctcagccgtcgatagaggcttcttcaggtctgtcttttat
cggtcctacaaagagcaggagtcaaagaaaggttttgatcaggaggagatctttgagaag
ccgacccgtgaaacctgtcagggtatgagacacgcaatctacgacaagctcgacgatgac
gggctcatcgcgcctggagttcgagtctccggtgaggacgtgatcatcgggaagacagtg
acgctgccggagaacgacgacgagctggacagcaccaaccggcgctacaccaagagggac
tgcagcaccttcctgaggaccagtgagaccggcatcgtggaccaggtgatggtgaccctg
aaccaggagggctacaagttctgcaagatcagggttcgctccgtcctggattcctcagat
ggagacaagttcgccagccgtcatggacagaagggaacctgtgggatccagtacagacag
gaggacatgccgttcacctgtgagggaatcacacctgacatcatcatcaacccgcacgcc
atcccgtccagaatgacagtcggccatctgatcgagtgtctgcaggggaaggtttctgcg
aacaaaggtgagatcggcgacgctacgccatttaacgacgccgtcaacgtacagaaagtg
tcgaacctgctgtctgaatacggataccacctgagaggaaatgaggtcctctataacggg
ttcacggggaggaagctgacgtctcagatcttcatcggtcccacttattatcagcgtctg
aagcacatggtggatgacaagatccactcgagggcccggggccccgtccagatcctcaac
agacagcctatggagggccgatcacgtgatggcggtctacgtttcggggagatggagcgt
gactgtcagatcgctcacggagcggctcagttcctcagagagcgtctgttcgaggcctct
gatccgtatcaagtccacgtctgtaacctgtgtgggctgatggccatcgccaacacgagg
acgcacacgtacgagtgtcgaggctgccgcaacaagacacagatctctctggtccggatg
ccgtatgcctgtaagctcctcttccaggagttgatgtccatgagcatcgctcctcgtatg
atgacgtcatag
DBGET
integrated database retrieval system
