Plectropomus leopardus (leopard coralgrouper): 121949961
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Entry
121949961 CDS
T07454
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121949961 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plep03019
]
121949961 (edc4)
Messenger RNA biogenesis [BR:
plep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121949961 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
121949961 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
RMC1_N
WDR55
Terpene_syn_C_2
Motif
Other DBs
NCBI-GeneID:
121949961
NCBI-ProteinID:
XP_042351769
LinkDB
All DBs
Position
11:30363645..30397272
Genome browser
AA seq
1392 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSTDAPSIDGPRMPSFNGELNGLLGAAGLLGGTD
RSTMSESSRPISTDLSSAQECQIICLSGDDRSTCIPITSNNVEIVASQDSSINSKARGSN
KVKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSLGFNERSLLKGFTG
AVTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTGNKILDQIVVHIQRPEDTPLNSHRRLIW
CPFIQDDSDENQDDTSQTLALLHEDMAEVWDLEVLRANNSSWPVDATDVKEGLITVKGHN
QRVSEGALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHGGRPLSCLLFCDN
HKRQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDLFNSSVLPSLKASLDLS
AEYLILTDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVRDVTHSRLRHTEV
LPAEEESESMTTEGTQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPNLGSSSAVFLPHSD
SQDGLAGFSDNLTDQSSDKESASGSQTDLRKIPSLPAPADFLSNSGASSGTKLMTPDAFM
TPSTSVPASPGSSASSLTIVTAISSNSDSTNRAIDDVNQSPNRVENNSSSSLALSTSTSS
PRAASAVLLPGLENLQALASPSGPLALDGPQVLDSPLLPPLASPTRARSPDVISSASTAM
SQDMPEIASQILQLQRGLVSGLEALPLSALQTDSMASAASALHLLTSPRTANNNSLLPLE
LGGGDGPVGGAAESEPRLSHTPSLLENALSQENPGVGGGSSDGNVSLTPWPAAPDITRET
RNSLRDNGLGDCSREESNDRHLSSPYHRRSYHLTQNDSQDAGAEQSDPDDEVASLASSSG
NCGARSSHRLPVKDGKTSPRGSPKVKRKTKKDDGESSQSRQMDSGQMNAEVQDELLMLLR
SQQRELTELRGQIEAMQSTIMARVEHVLTNHQEQEQRRLERVLAESQNHQQQLQEQLSQQ
LGHTLSSALTNRMDKVLREEMKKSVPQTISKSLEPVTGQLSNTIAAKLTAVEVTLKDNVS
KVVKSKNTTDAIGRAAAEAMQGPIQAAYKDTFQSIVLPVFERCCQSMFQQINDSFKQGTQ
EYIQQLETHMKNRKQREQETRDPMISQLQQMMDSFQSSTDQLANNITANVRADVQHQIQM
MVGNLQESILSHVQRIVKGEVSLAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQQA
NILQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCPLSQPVLLSLIQQLS
SNLTTRSELKISYLEDAVMNLDHSDPLTRDHMSSVCAQVRPKLFTFLQQDPHSPLSKRAR
RLMMMLQGLVSH
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaattccaacatagacattgagggtgcgacccagcatctccgggacatcctg
aagctcgaccggcccgggaacagcaccgatgccccatcaattgatggcccaagaatgccg
tcttttaatggggagctgaatgggttattgggagcagcaggccttttaggaggcactgat
cggtcgaccatgtcagaatcttccagaccaatctccacagacttaagcagcgctcaagag
tgtcagataatctgcctttctggtgatgatcgctccacctgcatccccatcacctccaac
aatgtggagattgtggcgagtcaagattccagcatcaacagcaaggctcgtggcagcaac
aaggtgaagattcaacctgttgccaagtatgactgggaacacaagtattattatggcaga
ctgatagctgtgtccaactccttcttggcctacgccatcagaggagccaataaccatgca
atgattcgtgtcctgagtctgggttttaatgagcgctccctactgaagggcttcaccgga
gccgtcacagatcttgctttcgcccacctcgactcctccctgttgggttgcgtggatgaa
gcaggcaacctgatggtctggcagctcacctgcactggaaacaagatactagatcagata
gtggttcatatccaacggccagaagacactccactgaactcccaccgtcggctcatctgg
tgcccgttcatccaggatgacagtgatgagaaccaggatgacactagccagactttagcc
cttcttcatgaagacatggctgaggtttgggacctggaagtcctaagagcgaacaacagc
agttggcccgtcgatgccacagacgtgaaagaagggctcatcacagtcaaaggacataac
cagcgagtcagtgaaggggccctgtctccagatggaaccgtgttagccacagccagccat
gatggatacatcaagttctggcagatatacatagaaggaggacaggacaaaccgagatgt
cttcatgaattgcggcctcatggaggacgccccctctcctgccttcttttctgtgacaac
cacaaaagacaggaccccgaggttcctttctggcggttccttataacaggagcagatcag
aaccaggagttgaaaatgtggtgcactgtttcctggacctgtttacaaaccatcaggttt
tctccagatctgttcaactcatcagttctgccgagtctgaaggccagtctggacctctct
gccgagtatcttatcctcacagacgtacagagaaaggttctgtatgtgatggagctgcga
caggatctggagaaagggaaggccagttttacagcggtgtccgagttcttgctgactcac
ccagtgctcagtttcggggtccgggatgtcacccacagcagattgcgacacactgaggtc
ctccctgcagaggaggagagtgagagcatgacaacagagggcacacaaggacccacagag
tccaagtctgggatacaaattaaactctactgtgttcacaccaagagtctgcaggatgtc
cagatctggtttcaacccaatttgggttccagctctgcagtcttcctgccacattctgat
tcccaggatggtttagctgggttttcagacaatctcaccgaccagagctctgacaaggaa
tcagcaagtggctctcagactgacctgaggaagatcccatcacttcctgcccccgctgac
ttcctgtcgaactcaggcgccagcagtgggaccaagctgatgactcctgatgccttcatg
acgccgagcacttcagtaccggcatcccccggcagcagcgccagcagtctgaccattgtg
acagctatcagcagcaactctgactcaactaacagagctatagacgatgtcaatcagagt
cccaacagagtggagaacaacagcagcagcagtctggcactctccacctccaccagcagc
ccaagagctgcctctgctgtgctgctgcctggactggagaacctacaggctttagcgtcc
cccagtggtcctcttgccctcgacggtcctcaggttctggattctcccctgctgccacct
ctggcctctccaactagggcgcgctctcctgacgtcatctcctcagcctccacagccatg
tcccaagacatgccggagattgcatcccagatcctgcagcttcagcgtggactagtgtcc
ggcttggaggctttacctctttctgcccttcagacagacagcatggcctctgctgcatcc
gccctgcacctactcacgtcaccgcgcacagccaacaacaacagcctgttgccactcgaa
ctcggaggtggtgatggaccagtgggcggggcagcagagtcagagcccagactcagtcac
accccatctctacttgagaacgccttatcacaggagaatcctggtgttggtggaggttca
tcagatggtaatgttagcctcacgccttggcctgctgcgcccgacatcaccagagaaacc
aggaacagtctcagggacaacggtcttggagactgctcaagagaggagtcgaacgacaga
cacctgagctcaccttaccatcgacgctcatatcacctcacgcagaacgacagtcaggat
gctggcgcagagcagagtgaccctgacgatgaggtggccagcctcgcatcatcctcagga
aactgtggcgctcgttcttctcacagactaccagtcaaggacgggaagacctcaccacga
ggctcgccaaaagtaaagaggaagaccaagaaagatgacggtgaatcttctcagtcccgg
caaatggactctggtcagatgaatgcagaagtacaggacgagttgttgatgctcctgcgc
agccagcagagggagttaactgaactgcgaggacagattgaagccatgcagagcaccatc
atggcccgagtggagcacgtcctcaccaaccaccaggaacaagaacagcgcagactagag
cgagttctggcagagagtcagaaccatcagcagcagcttcaggaacaactcagccagcag
ctcggccacaccctcagctcggcactaaccaacagaatggacaaagtgctacgagaggaa
atgaagaaatcagtcccacaaacaatctctaagagtttggagcccgtgacgggccagctg
agcaacacaattgctgctaaactgactgcagtggaggtcaccctgaaggacaacgtcagc
aaggtggtcaaatcaaagaacacgactgatgctattggccgagcagcagctgaagcgatg
caggggcccatccaggcagcctataaagacaccttccagagcatcgtgctgcctgtgttt
gaacgatgctgccaatccatgttccaacaaatcaacgacagcttcaagcaaggcacacaa
gaatacatccaacagcttgagacccacatgaagaacaggaagcagagggagcaagagaca
cgagaccccatgatcagccagctccagcagatgatggacagcttccagagctccactgat
cagctcgccaataacatcacagctaacgtccgggcagacgtccagcaccagatccagatg
atggtgggaaatttgcaggagtctattcttagccacgtgcagcgaattgtcaaaggggag
gtgagcttggcaatgaaggagcagcaggcagtggtgacctccagcatcatgcaggcgatg
aggtcggcggcgggcacgcccgtccccacagctcacctcgactaccagacacagcaggcc
aacatcctgcagctcctacagcagggccagctcaaccaggctttccagcaggcgctgtca
gcgacagatctgaacttggtgttgtatgtgtgtgagaccatcgactctcagcaggtgttc
ggtcagcacccctgccctctcagccagcctgtcctgctgtcactcatccagcagctctcc
tccaaccttacaacccgctctgagctcaaaatcagctacctggaggacgcagtgatgaac
ctggaccactcggacccgctgacgagagaccacatgtcctctgtgtgcgcccaggtcagg
ccgaagctcttcaccttcctgcagcaggacccccacagcccgctcagcaagagggcgcgg
cgcctgatgatgatgctgcagggtctcgtcagccactag
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integrated database retrieval system
