Plectropomus leopardus (leopard coralgrouper): 121951868
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Entry
121951868 CDS
T07454
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep04382
Cornified envelope formation
plep04510
Focal adhesion
plep04512
ECM-receptor interaction
plep04518
Integrin signaling
plep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121951868
04518 Integrin signaling
121951868
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121951868
09142 Cell motility
04820 Cytoskeleton in muscle cells
121951868
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121951868
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plep04147
]
121951868
00536 Glycosaminoglycan binding proteins [BR:
plep00536
]
121951868
Exosome [BR:
plep04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121951868
Glycosaminoglycan binding proteins [BR:
plep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121951868
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121951868
NCBI-ProteinID:
XP_042354287
LinkDB
All DBs
Position
12:complement(14884696..14920660)
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AA seq
1674 aa
AA seq
DB search
MRRPVFEVPLILFAVMLMGTVAKNCECNGRSRCHCKGVKGSRGEKGFPGLEGPPGSGGRP
GSDGHAGPLGPKGNTGPVGPVGPKGDPGPEGKEGFAGSHGLPGITGLQGPPGPVGAPGCN
GTDGDDGPPGVPGAHGIDGPAGPPGLPGPKGDSQISQNTIPGPPGPPGRDGEPGNPGFPG
ERGLPGDPGPQGYVGFIGRPGAPGSKGQEGIGSVPGPRGPKGRPGPRGPPGPPGRIKEFF
SESLILKGVKGDRGDIGDKGCKGAPGDLGYGYYTKGAKGDKGPEGPEGKPGKNGNPGRQV
LGRPGPVGEPGYPGTPGPMGEKGDQGPPGPPGDVNSWPVIELLKGYRGDPGFPGPPGLPG
RQGVVGFPGADGPPGQSSGVYVPGPRGPTGSPGPKGDPGESGDIYLGSPGLDGDEGDQGP
PGDPGPPGPPEDRTHRTTKGLPGMKGTRGTRGPMGYDGTYGKKGEKGEPCYDCIGSGSPG
PPGPRGPPGIPGYSQGPGAEGDPGLPGPSGLPGLPGLIGQMGFPGLTGQKGDSHYYSSPG
VKGEKGDPGRIGGPGGNGLPGFPGLPGRKGDQGPPGDSYPFPGSEGDIGFPGPPGPLGNP
GPLGYPGPEGFGPTGIPGSKGAVGVPGFPGQPGFPGQKGEPSPIHTKGLPGPRGFKGQPG
STGSPGSYGAPGTLGPPGLQGQKGESGEVSFPGRPGFPGQKGDKGQPGLPGFPAGGLPGR
PGPLGLPGPAGQKGESGLGYPGPPGPPGPTGADGAPGALGDPGIPGGSGNPGRNGNPGFP
GEKGIKGSVGPPGPAGTKDSCKGDLPGPRGAQGPDGYPGLPGPDGSPGEKGNPGLPGFGR
PGATGEPGLLGPSVPGSRGLTGQKGIKGQNGVPGQPGLRGDPGPDGLPGYGSEGLPGITG
PPGQIGDPGPDGAKGVPGPPGMNGDPGPRGLPGLPSPQPLNIFGPPGEPGDLGQPGLPGA
RGDTGGIGPKGQRGIHGARGSPGQRGSPGDPGVDESVLSEGSRGLPGAPGDSGVQGPPGQ
KGIKGDRGISGRPGPGGVPGPAGNKGVNGEPHYCGYGLPGPAGQKGEPGLTSPYVMKGQK
GEFGSFGPSGLPGSHGAKGNPGPIGQNGSLGYEGPKGSKGPPGSKGQRGPNGSPGVPGLP
GSRGYPGPKGNPGWDGIPGPPGQEGDTIIIGGTPGRRGDPGQQGPPGDRGPPGMSVSGGP
GPIGDRGNPGSPGLTGLKGPPGRDGECVSGSKGNLGHPGPSGSPGYRGLRGPPGPTVYLL
KGDRGDPGPTGVPGSSGPRGDPGLEGPTGPRGRPGDPGPRGDSGPPGNYGPPGGRGDPGY
IPGPPGPPGIKGFPGRPGPKGEPAFSIEIYEPGPSGLTGTRGNRGDPGITGPPGLPGPPG
QPGVKGEPGFNPDGPPGFTGHKGDKGIAGLPGPDGKLGNPGNKGPPGLPGTGGPGFVDSF
LIARHSQSIRVPDCPHGTSLIYSGYSFLFINGNERAHGQDLGTMGSCLPRFSTMPFLFCD
KERNCRYASRNDYSYWLSTDTPIPANMVSITGDKLASYISRCSVCETTSNVIAVHSQTTL
IPDCPQGWESLWIGFSFVMQTGAGAEGSSQPLVSPGSCLESFRQVPFIECHGRGTCNYYP
DSYSYWLASLDPNSMFSKPVPQTVNGPSQQNVISRCRVCRKPTWQHGNSQSTEK
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgagaaggccagtgtttgaagttcctctgatcctgtttgctgtgatgttgatgggcact
gtggccaaaaattgtgagtgcaatgggagatcaaggtgccactgtaaaggagtaaaaggc
agcaggggagaaaaaggttttcccggacttgaaggtcccccaggatcagggggccgtcca
ggatcagatggtcatgccggaccattgggaccaaagggcaacactgggcctgttggacct
gtggggccaaaaggcgatccgggacctgaaggcaaagaaggatttgctgggtctcatggt
ttaccgggtatcacaggtttacaaggacctccaggaccagttggagctccaggctgcaat
ggaacagatggagacgatggacctcctggtgttcccggggcccatgggattgatggacct
gcaggtccacctggcttgcctggaccaaagggtgattctcagatatcacagaatacaata
ccagggccacctgggccacctgggagggatggagagccgggaaatccaggtttccctgga
gagcgtggattaccaggggaccctggaccacagggatatgttgggtttattggccgccct
ggggctccaggatctaagggtcaagagggcataggtagtgtcccaggacctcgtggacca
aaggggagaccaggaccaagagggccaccggggccaccaggtcgcatcaaggagtttttc
tctgagagtctcatattaaaaggtgtaaaaggagacagaggagatataggagataaaggc
tgcaagggtgcaccaggagaccttggttacggctattacaccaaaggggcaaagggcgac
aaaggaccggagggtccagaaggaaaaccagggaagaatggtaatcctggacgacaagta
ttgggacggcctggccctgtaggtgagccaggatatccagggacaccaggaccgatgggt
gaaaagggagatcagggtcctcctggtccgcctggagatgtgaatagttggcctgtgatc
gagctactgaaaggataccgtggagatcctggtttcccaggcccacctggacttcctggt
cgtcaaggtgttgtgggatttcctggagctgatggacctccaggccaatcatctggggtt
tatgtgcctggcccacgtggtcccactggctctccaggccccaaaggtgatcctggggag
tctggggatatttatctaggatccccaggtctagatggggatgaaggcgatcaagggcct
ccaggggatccgggtccgcctggacctcctgaagacagaacacacaggactaccaaaggt
ctgccaggaatgaagggaacgaggggtacacgtggacctatgggatatgatgggacgtat
ggaaagaaaggagagaaaggggagccctgttatgattgtattggatcaggatccccagga
ccaccaggtccccgtggtccacctggcatcccgggatatagtcaaggaccaggtgctgaa
ggtgatccaggcctcccagggccttctggcttacctggactgccaggtcttattggtcaa
atggggtttccaggccttacgggacaaaagggagactcacattattacagcagtcctggg
gtgaagggagagaaaggtgacccgggacggattggtgggcccggtggaaatggcctcccc
gggtttcctgggctaccaggtcgcaaaggagatcaagggcctccgggggattcatatccc
ttccctggttcagagggagacattggattcccaggtccaccagggcccttaggcaatccg
ggaccactcggctatcctgggccagagggatttggccccactggaattcctggaagtaag
ggagctgttggggtacctggctttccaggacagcctggatttccaggccagaaaggtgaa
cctagccccatccacactaaaggacttccaggaccccgagggtttaaaggtcagccaggt
tcaactggaagcccaggtagttacggagccccaggaaccctaggacctccaggtttacaa
ggacagaaaggagaaagtggtgaggtgtcatttcctggaaggccaggattcccaggacag
aaaggtgacaaggggcagccaggtcttccaggctttcctgctgggggcttgcctggtcgg
ccaggaccactaggtcttcctggacccgcaggacagaagggggagagtggccttggatac
cctggccccccaggacccccagggccgacaggagcagatggagctccgggggctttagga
gatcctggaatccctgggggttctgggaacccaggacgaaatggcaatcctggttttcca
ggagaaaagggaattaaaggttctgtagggccccctggaccagctggtactaaagattca
tgtaaaggtgatttacctggaccaaggggagcacaaggaccagatggttatccaggactt
ccaggacctgacggctcccccggtgagaagggaaacccaggtttgccagggtttggtcgt
cctggtgccaccggtgaacctggccttcttgggccatcagtaccaggctcacgtgggctt
actggacaaaaagggatcaagggacaaaacggcgtgcctggtcaaccaggactgagagga
gacccgggaccggatgggttaccaggatatggatcagaagggttgcctggaattacagga
ccaccaggccaaataggtgaccctggcccagatggagccaaaggtgtcccaggtccacca
ggaatgaatggcgacccaggtcccagaggtcttccaggccttccatcaccacaaccatta
aacatttttgggcccccaggggagcctggcgatctgggtcaacctggtctccctggtgcc
cgtggagatactggaggtataggaccaaaagggcagagagggatacatggagcacgaggg
agtcctgggcaaagaggttccccaggtgatccaggtgttgatgaatcagtgctctcagaa
ggaagtcgaggacttcctggagctccaggagactcaggagtccaagggcctccaggccaa
aagggaataaaaggagatcgaggaatctctggaaggccaggtccaggtggtgtaccaggt
ccagctggaaacaaaggggttaatggagagccacattactgtggatatggattgccagga
ccagcgggacaaaagggtgaaccaggattaaccagtccttatgtgatgaagggtcagaaa
ggtgaatttggttcttttggaccttcaggtttaccaggaagccacggagccaaaggaaac
ccagggcctattggacaaaatggttcacttggctatgaggggcctaaaggttcaaaaggg
cctccaggaagcaaaggacagcggggacccaatggatcaccaggtgttccaggcctgcca
ggtagcaggggttacccaggtcctaaaggcaacccgggctgggatgggatccctggacca
ccagggcaggaaggagacactatcataataggagggactcctggcaggcgtggtgaccca
ggtcaacaagggccccccggggatcgtggtccccctggcatgtctgtttcagggggtcct
ggaccaataggagacagaggaaatccaggttcacctgggctcactggtcttaaaggacca
ccaggaagagatggtgaatgtgtttctgggtcaaaaggaaaccttggccatcctggccct
tctggtagcccaggctatcgtggcttacgtggccctccaggtcctacagtgtatctctta
aaaggagacagaggggacccaggtcctacaggagtcccaggctctagtggaccccgagga
gatccaggccttgaaggtccaactggtcctagaggcagacctggagacccgggaccaaga
ggtgattctggtcctcctggaaactatgggcctccaggtggtaggggagatcctggatac
atcccaggccctcctggtccacctgggattaaaggatttcctggacgacctggccccaaa
ggtgaaccagcgtttagcatagaaatatatgaaccaggaccttctggcttaactggtacc
cgtggcaatcgaggagacccagggattactggaccaccaggactgccaggcccaccaggt
cagccaggcgtcaaaggagagcccggtttcaacccagatggcccgcccggctttactggc
cacaaaggagacaaaggaatagcagggcttccaggtccagatggtaaacttggaaatcca
ggcaacaaaggtcctccagggttgccagggacaggtggtccaggttttgttgacagtttc
ctgatagccagacacagtcagagcatcagagtccctgactgtcctcatggcaccagcctc
atctactctggttactccttcctcttcatcaatggaaatgagagagctcatggtcaggac
cttggcaccatgggaagttgtctccctcgtttctccaccatgccattcctgttctgtgac
aaagagcgtaactgccgctatgcctctcgtaacgactactcttactggttgtccactgac
actcccatacctgccaacatggtttccatcacaggggataaactggcctcctacatcagc
aggtgctcagtgtgtgaaaccacctccaacgtcatagccgtacacagccagacaactctg
atacctgactgtccacaaggatgggagtctctatggattggattctcttttgtcatgcaa
actggtgctggagcagaaggctcctcccagcccctggtttctcctggctcatgtctggaa
agtttccgccaagtgcccttcatcgagtgtcacggcagggggacgtgtaactactaccct
gattcctacagctactggctagcctccctagaccccaacagcatgttcagcaaacccgtt
cctcagacagtgaatggaccttctcaacaaaatgtcatcagccgatgtcgagtctgcaga
aaaccaacatggcaacacggtaacagccagagtactgagaaataa
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