Plectropomus leopardus (leopard coralgrouper): 121951869
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Entry
121951869 CDS
T07454
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep04382
Cornified envelope formation
plep04510
Focal adhesion
plep04512
ECM-receptor interaction
plep04518
Integrin signaling
plep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121951869
04518 Integrin signaling
121951869
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121951869
09142 Cell motility
04820 Cytoskeleton in muscle cells
121951869
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121951869
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plep04147
]
121951869
00536 Glycosaminoglycan binding proteins [BR:
plep00536
]
121951869
Exosome [BR:
plep04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121951869
Glycosaminoglycan binding proteins [BR:
plep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121951869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121951869
NCBI-ProteinID:
XP_042354288
LinkDB
All DBs
Position
12:14921396..14945202
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AA seq
1670 aa
AA seq
DB search
MGSPVSVVTLSSIKWIFVLVVCVQQLNAGEIDSPCEGRDCSVCPCLPAKGARGAPGKPGQ
QGPRGPVGPRGREGLLGEKGRRGAEGSPGPDGPKGDHGRTGPPGFPGNDGSPGHPGAGGE
PGAPGVDGCNGTRGRPGVFGIPGLDGLHGPPGLAGPKGIKGEPLYGAALPGLPGERGTDG
PCGQPGRKGDIGPWGNTGPRGPIGFEGSEGPKGVRGPPGDPRGSLEGAKGDDGDQGPPGL
QGPEEVIEFPPDILSPKGYKGDRGPPGPCGPKGISGGRGDYIQGVKGIKGISGFPGPRGP
PGSPGRDGLPGWEGSRGEKGFPGLTGRNGPKGYPGDPGLPGPQHFLNGSDARGVKGDRGY
PGLAGPPGDPGYMGMQGPPGPPGLTIPEELGLPGPRGLPGPKGYKGEPGSYINTENLLPG
PKGSKGLLGPKGVTGPPGRPGCGDYYCEPGNSGDPGDVGPKGFPGNKGLRGIKGCPGECN
CGSGGGKEGPPGPPGYAGPQGLPGTKGLKGHPGLKGDEGLRGQQGFQGPPGVKGQKGQKG
DVFVAGLKGAKGNQGVPGYPGPPGDTGRPGLDGSPGPAGDRGTPGAGFAGLRGPKGVPGT
AGPKGFPGLVGPPGPGFPGAKGLPGPKGDPGYPGSPGIPGRQGPQGDSCCQEVEIGSPGP
KGEPGSPGIPGVPGGIGRPGSLGYPGPKGMKGDDSKTGGIGPQGPPGLNGDPGDPGPSGV
SLKGPPGSPGLPGSPGRKGDPGDVLSVSRGPTGLPGHSGALGTKGPRGTPGKPGIPGAQG
QRGRPGWKGDPGDNGDPGATGPPGPPCTLCDLTGPPGPPGLPGNPGRRGAPGYLGRKGSK
GDIGPPGNGRMGPKGFPGPPGLPGPAGPRGTTGPLGDPGIDGRPGQKGERGYTGRAGAKG
LPGPPGPPGSRGQQGERGFNGRPGDAGYSGQLGNKGVRGPPGFPGPSGIVNLTKGPSGIS
GRKGQQGPPGPAGLKGPSGGPGDSGPDGPPGLPGFKGSPGAPGKAGIPGPSGYPGVKGFP
GPRGYLGHAGDPGDQGPWGQPGIPGFPGRPGAKGEPGPSYGQPGPPGPKGLPGEDGPRAP
SGSPGDPGDRGQPGLSGEPGQPGIVGEPGQRGGPGYPGPHGPSGCPGVPGPPGDHGGLGP
PGLPGPYGPPGPPGPPGLHGLDGLRGPKGKKGGRGAVIPGFPGPDGFPGVKGIRGQQGPP
GISFPGPKGQRGPPGNTGPPGLPGEPGIPGKECYTPRMGPCGDVGYEGPQGPPGPAGECG
PPGPSVPFKGDPGLNGLHGLPGRKGDRGLPGPPGSQSNPGFSGPKGERGSAGPKGPPGPK
GQIGVPGPWGRKGVTGPPGEAGAKGAPGDSFRGPPEIVPHGLIGPPGDPGPRGYLGNAGP
PGTPGRKGQMGSKGCVGLPGRPGPPGRKGPVGDPGDVGQRGFTGLQGVTGPPGDPGNPGY
RGASRSGFLLVIHSQSVLVPWCPAGSSQLWVGYSLVYLEGQEKAHTQDLGQAGSCLPVFS
TMPFSYCNKAACHYSARNDKSYWLSTTAPIPMMPLFGKEISSHISRCVVCETAAPAVAFH
SQDQTVPACPPGWRSLWTGYSFLLHTGTGDEGGGQSLTSSGSCLKDFRTQPFIECQGARG
SCHYFANLYSFWLTTVSQNEQFISPRSGTIKAANKQREKTSQCNVCLREQ
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgggatccccagtttctgttgtgactctaagctccatcaagtggatctttgtcctggtc
gtctgtgtgcagcagctcaatgcaggggagattgacagcccatgtgagggccgagactgc
tctgtatgcccctgtcttcctgccaaaggtgcacggggagctccagggaaaccaggccag
caaggcccgcggggaccggtgggaccacggggacgtgaaggtttacttggagagaaaggc
aggcggggagcagagggatcacctggcccagacgggcccaaaggagaccacggccggact
ggacctcctggttttcctggtaatgatggctcaccaggacaccctggggcaggtggtgag
ccgggtgcaccaggagtggatggctgtaatgggacaaggggtcgaccaggagtttttggt
atccctggtttggatggcctccatgggccaccgggattagcaggacctaaaggaattaaa
ggagaacctttgtatggtgctgcccttccagggcttccaggagagcggggtacagatgga
ccatgtggtcaacctggaagaaaaggagacattgggccctggggcaacactggccctcgt
ggccctattggatttgagggctctgaaggacctaaaggtgtgagaggaccaccaggcgac
cccagaggatcactggaaggcgccaaaggtgacgatggtgaccaaggcccacctggccta
caaggacccgaagaagtcatagaatttcctcctgacattttgtcacccaaaggttacaag
ggagatcgaggtccacctggaccatgtggaccaaagggcataagcggtggtagaggagac
tacattcaaggagttaaaggaataaaaggaatctctggttttcctggacctaggggtcct
ccaggatctcctggtagagatggattgccaggatgggagggttcccgtggagagaaagga
tttccaggtctcactggaagaaacggaccaaagggttatcccggagatccaggtctccct
ggtccccagcactttctcaatggaagtgatgccagaggtgttaaaggtgaccgtgggtat
cctggattggctggaccgccaggtgaccctgggtacatgggcatgcaaggacctcctggc
ccaccagggttaacaataccagaagagctgggtctgcctggtccccgcgggttacccggt
cccaagggatacaagggagagccaggaagctacatcaacaccgaaaatctccttccagga
ccaaagggaagcaaaggactcctcggacctaaaggtgtcacaggccccccaggtcgtcca
ggatgtggagattactactgtgagcctggtaattctggggaccctggagacgtaggacct
aaaggatttcctggaaacaaaggtctcagaggaattaaagggtgtccaggggaatgtaac
tgtgggtctggtgggggaaaagaaggcccccctggtccccctggttatgcaggacctcaa
ggattacctggaactaaaggacttaaaggacacccagggctgaagggagatgagggtcta
agaggacaacaaggctttcaaggacctcctggtgtaaaaggacaaaaaggtcaaaaaggt
gatgtttttgtggcaggtcttaaaggtgctaagggtaaccaaggggtacctggatatcct
ggtcctcctggagacacagggaggccaggactggatggttcccctggccctgcaggagac
cgtggaacaccgggggctggatttgcaggattacgtggtccaaaaggtgtccctggtact
gctggacccaaagggtttccaggacttgtgggcccccctggtcctggttttccaggtgct
aaggggctacctggacctaaaggtgatcctggatatcctggctctccaggaattcctgga
cgacaaggcccccaaggtgactcatgctgtcaagaggtcgagattggatcccctggtcct
aagggtgaaccaggttcaccagggattccaggtgtgccaggaggaattggtcgtcctgga
agtctgggatatccaggccctaaaggcatgaaaggagatgacagtaaaactggagggatt
ggacctcaaggacctccgggtttaaatggggatccaggtgaccctggtccaagtggagtt
agcctgaaaggccctccaggctcacctgggttgccaggatcaccaggcaggaagggtgac
ccaggagatgtcctctctgtcagtcgaggccctactggcctccctggccactccggggct
ctagggacaaaaggaccccgtggcactcctggaaaaccagggattccaggtgcacaaggc
caacgtggacgacctggttggaaaggcgaccctggagacaatggtgaccctggagccact
ggtcccccaggtccaccatgcactctgtgtgatctgactggacctccaggccctccagga
cttccaggaaaccctggacggaggggagcaccaggttaccttggtcggaagggttcaaag
ggagatataggtccacctggtaatggacggatgggtccaaaaggtttccctggcccgcct
ggtttgccaggcccagctggaccaagaggcaccactggccccttgggagatcctgggata
gacggcaggccaggacagaaaggtgaaaggggttacacaggcagggctggggccaaaggt
ctaccaggtcctcctggacctccgggatccagaggtcaacaaggagaaagaggctttaat
ggtcggccaggcgacgccggatactccggacagcttggtaataaaggtgtacgcggtcca
ccaggatttccaggaccatcagggatcgtgaatctaactaaaggcccgtcaggaatttct
ggaagaaaggggcaacaaggaccaccaggacctgcaggcttgaagggcccaagtggaggg
ccaggtgattcaggacctgatggaccacctgggttaccagggtttaaaggcagccctggt
gctcctggcaaggcaggaataccaggaccttctgggtaccctggagttaaaggttttcct
ggcccaaggggttatcttggacatgcaggagatccgggagatcaaggtccttggggacag
ccgggtatcccagggtttccaggacgtccaggagccaaaggtgagccaggaccatcctat
ggacaacctggtccacctggacccaaaggattgccaggagaggatgggccccgtgcaccc
agtgggagtccaggagatccaggggaccgaggacaaccgggattgtcaggagagcctgga
caaccaggcattgttggggaaccaggtcaacggggaggaccaggctaccctgggcctcat
ggcccatcaggttgtccaggtgttccaggtcctccaggtgatcatggtggtctgggacct
ccaggcctacctggcccatatgggcctccaggaccccctggaccaccaggtctccatgga
ctggatggacttagaggtccaaaagggaaaaaaggagggagaggcgcagttatccctggt
ttcccaggaccagatggttttcctggagtcaaaggtatcaggggccagcaaggacctcca
ggaatcagttttccagggcccaaaggccagagggggccacccggcaacacaggtcctcca
ggtttaccaggtgaacctggtatccctggaaaagaatgctacacacctaggatgggaccc
tgtggagatgtagggtatgagggacctcaaggaccccccggtcctgctggggagtgtggc
cctccaggccccagcgttcccttcaaaggggacccaggcctaaatggcctccatgggtta
ccaggccgtaagggggataggggccttccaggacctcctgggtctcagtccaatccaggc
ttttcaggaccaaaaggtgagagaggttctgctggtcctaaaggtcctcctggacccaaa
gggcagattggggtgcctgggccttggggccgtaagggagtaacaggcccacctggtgag
gcaggtgccaaaggtgctcctggtgattcatttcgtggacctccagagatagttccccat
ggactcattgggcctcctggtgacccaggacctagaggataccttggcaatgcaggtccc
cctgggactccaggacgtaaaggacagatgggctcgaaaggatgtgtgggcctcccaggc
agaccaggtccacctggtcgtaaaggccctgttggagacccaggagatgttggtcagcgt
ggatttactggacttcagggtgtcacaggtccacctggtgatcccggtaatccaggctac
agaggggcgtcaaggtcaggcttccttctggttatccacagccagtcagttctggtgccg
tggtgccctgccggcagcagtcagctgtgggtaggctacagtcttgtctacttggaggga
caagagaaggctcacacccaagatctaggtcaagctggctcctgcctccctgtcttctcc
accatgcctttctcctactgcaacaaagctgcctgtcactactcagctcgcaacgacaaa
tcctattggctctccaccaccgctcccatacccatgatgccactctttggcaaggaaatt
agctcccacatcagccgctgtgtggtgtgtgagacagctgcacctgcagtggcttttcac
agccaggatcaaacagtccctgcatgcccacctggctggaggagtctgtggacgggttac
tctttcctcctgcacacagggacaggtgatgaaggtggtggccagtctttgacttcttct
ggtagctgccttaaggatttccgaactcagcccttcatagagtgtcagggtgcgcgcggt
tcctgtcactactttgccaacctctacagtttttggctgactactgtgagtcaaaacgag
cagtttatcagcccgaggtctggtaccatcaaagcagccaacaaacagcgagaaaagacc
agtcagtgtaatgtctgcctcagagagcaataa
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