Plectropomus leopardus (leopard coralgrouper): 121951869
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Entry
121951869 CDS
T07454
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep04510
Focal adhesion
plep04512
ECM-receptor interaction
plep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121951869
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121951869
09142 Cell motility
04820 Cytoskeleton in muscle cells
121951869
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plep04147
]
121951869
00536 Glycosaminoglycan binding proteins [BR:
plep00536
]
121951869
Exosome [BR:
plep04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121951869
Glycosaminoglycan binding proteins [BR:
plep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121951869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121951869
NCBI-ProteinID:
XP_042354288
LinkDB
All DBs
Position
12:14921396..14945202
Genome browser
AA seq
1670 aa
AA seq
DB search
MGSPVSVVTLSSIKWIFVLVVCVQQLNAGEIDSPCEGRDCSVCPCLPAKGARGAPGKPGQ
QGPRGPVGPRGREGLLGEKGRRGAEGSPGPDGPKGDHGRTGPPGFPGNDGSPGHPGAGGE
PGAPGVDGCNGTRGRPGVFGIPGLDGLHGPPGLAGPKGIKGEPLYGAALPGLPGERGTDG
PCGQPGRKGDIGPWGNTGPRGPIGFEGSEGPKGVRGPPGDPRGSLEGAKGDDGDQGPPGL
QGPEEVIEFPPDILSPKGYKGDRGPPGPCGPKGISGGRGDYIQGVKGIKGISGFPGPRGP
PGSPGRDGLPGWEGSRGEKGFPGLTGRNGPKGYPGDPGLPGPQHFLNGSDARGVKGDRGY
PGLAGPPGDPGYMGMQGPPGPPGLTIPEELGLPGPRGLPGPKGYKGEPGSYINTENLLPG
PKGSKGLLGPKGVTGPPGRPGCGDYYCEPGNSGDPGDVGPKGFPGNKGLRGIKGCPGECN
CGSGGGKEGPPGPPGYAGPQGLPGTKGLKGHPGLKGDEGLRGQQGFQGPPGVKGQKGQKG
DVFVAGLKGAKGNQGVPGYPGPPGDTGRPGLDGSPGPAGDRGTPGAGFAGLRGPKGVPGT
AGPKGFPGLVGPPGPGFPGAKGLPGPKGDPGYPGSPGIPGRQGPQGDSCCQEVEIGSPGP
KGEPGSPGIPGVPGGIGRPGSLGYPGPKGMKGDDSKTGGIGPQGPPGLNGDPGDPGPSGV
SLKGPPGSPGLPGSPGRKGDPGDVLSVSRGPTGLPGHSGALGTKGPRGTPGKPGIPGAQG
QRGRPGWKGDPGDNGDPGATGPPGPPCTLCDLTGPPGPPGLPGNPGRRGAPGYLGRKGSK
GDIGPPGNGRMGPKGFPGPPGLPGPAGPRGTTGPLGDPGIDGRPGQKGERGYTGRAGAKG
LPGPPGPPGSRGQQGERGFNGRPGDAGYSGQLGNKGVRGPPGFPGPSGIVNLTKGPSGIS
GRKGQQGPPGPAGLKGPSGGPGDSGPDGPPGLPGFKGSPGAPGKAGIPGPSGYPGVKGFP
GPRGYLGHAGDPGDQGPWGQPGIPGFPGRPGAKGEPGPSYGQPGPPGPKGLPGEDGPRAP
SGSPGDPGDRGQPGLSGEPGQPGIVGEPGQRGGPGYPGPHGPSGCPGVPGPPGDHGGLGP
PGLPGPYGPPGPPGPPGLHGLDGLRGPKGKKGGRGAVIPGFPGPDGFPGVKGIRGQQGPP
GISFPGPKGQRGPPGNTGPPGLPGEPGIPGKECYTPRMGPCGDVGYEGPQGPPGPAGECG
PPGPSVPFKGDPGLNGLHGLPGRKGDRGLPGPPGSQSNPGFSGPKGERGSAGPKGPPGPK
GQIGVPGPWGRKGVTGPPGEAGAKGAPGDSFRGPPEIVPHGLIGPPGDPGPRGYLGNAGP
PGTPGRKGQMGSKGCVGLPGRPGPPGRKGPVGDPGDVGQRGFTGLQGVTGPPGDPGNPGY
RGASRSGFLLVIHSQSVLVPWCPAGSSQLWVGYSLVYLEGQEKAHTQDLGQAGSCLPVFS
TMPFSYCNKAACHYSARNDKSYWLSTTAPIPMMPLFGKEISSHISRCVVCETAAPAVAFH
SQDQTVPACPPGWRSLWTGYSFLLHTGTGDEGGGQSLTSSGSCLKDFRTQPFIECQGARG
SCHYFANLYSFWLTTVSQNEQFISPRSGTIKAANKQREKTSQCNVCLREQ
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgggatccccagtttctgttgtgactctaagctccatcaagtggatctttgtcctggtc
gtctgtgtgcagcagctcaatgcaggggagattgacagcccatgtgagggccgagactgc
tctgtatgcccctgtcttcctgccaaaggtgcacggggagctccagggaaaccaggccag
caaggcccgcggggaccggtgggaccacggggacgtgaaggtttacttggagagaaaggc
aggcggggagcagagggatcacctggcccagacgggcccaaaggagaccacggccggact
ggacctcctggttttcctggtaatgatggctcaccaggacaccctggggcaggtggtgag
ccgggtgcaccaggagtggatggctgtaatgggacaaggggtcgaccaggagtttttggt
atccctggtttggatggcctccatgggccaccgggattagcaggacctaaaggaattaaa
ggagaacctttgtatggtgctgcccttccagggcttccaggagagcggggtacagatgga
ccatgtggtcaacctggaagaaaaggagacattgggccctggggcaacactggccctcgt
ggccctattggatttgagggctctgaaggacctaaaggtgtgagaggaccaccaggcgac
cccagaggatcactggaaggcgccaaaggtgacgatggtgaccaaggcccacctggccta
caaggacccgaagaagtcatagaatttcctcctgacattttgtcacccaaaggttacaag
ggagatcgaggtccacctggaccatgtggaccaaagggcataagcggtggtagaggagac
tacattcaaggagttaaaggaataaaaggaatctctggttttcctggacctaggggtcct
ccaggatctcctggtagagatggattgccaggatgggagggttcccgtggagagaaagga
tttccaggtctcactggaagaaacggaccaaagggttatcccggagatccaggtctccct
ggtccccagcactttctcaatggaagtgatgccagaggtgttaaaggtgaccgtgggtat
cctggattggctggaccgccaggtgaccctgggtacatgggcatgcaaggacctcctggc
ccaccagggttaacaataccagaagagctgggtctgcctggtccccgcgggttacccggt
cccaagggatacaagggagagccaggaagctacatcaacaccgaaaatctccttccagga
ccaaagggaagcaaaggactcctcggacctaaaggtgtcacaggccccccaggtcgtcca
ggatgtggagattactactgtgagcctggtaattctggggaccctggagacgtaggacct
aaaggatttcctggaaacaaaggtctcagaggaattaaagggtgtccaggggaatgtaac
tgtgggtctggtgggggaaaagaaggcccccctggtccccctggttatgcaggacctcaa
ggattacctggaactaaaggacttaaaggacacccagggctgaagggagatgagggtcta
agaggacaacaaggctttcaaggacctcctggtgtaaaaggacaaaaaggtcaaaaaggt
gatgtttttgtggcaggtcttaaaggtgctaagggtaaccaaggggtacctggatatcct
ggtcctcctggagacacagggaggccaggactggatggttcccctggccctgcaggagac
cgtggaacaccgggggctggatttgcaggattacgtggtccaaaaggtgtccctggtact
gctggacccaaagggtttccaggacttgtgggcccccctggtcctggttttccaggtgct
aaggggctacctggacctaaaggtgatcctggatatcctggctctccaggaattcctgga
cgacaaggcccccaaggtgactcatgctgtcaagaggtcgagattggatcccctggtcct
aagggtgaaccaggttcaccagggattccaggtgtgccaggaggaattggtcgtcctgga
agtctgggatatccaggccctaaaggcatgaaaggagatgacagtaaaactggagggatt
ggacctcaaggacctccgggtttaaatggggatccaggtgaccctggtccaagtggagtt
agcctgaaaggccctccaggctcacctgggttgccaggatcaccaggcaggaagggtgac
ccaggagatgtcctctctgtcagtcgaggccctactggcctccctggccactccggggct
ctagggacaaaaggaccccgtggcactcctggaaaaccagggattccaggtgcacaaggc
caacgtggacgacctggttggaaaggcgaccctggagacaatggtgaccctggagccact
ggtcccccaggtccaccatgcactctgtgtgatctgactggacctccaggccctccagga
cttccaggaaaccctggacggaggggagcaccaggttaccttggtcggaagggttcaaag
ggagatataggtccacctggtaatggacggatgggtccaaaaggtttccctggcccgcct
ggtttgccaggcccagctggaccaagaggcaccactggccccttgggagatcctgggata
gacggcaggccaggacagaaaggtgaaaggggttacacaggcagggctggggccaaaggt
ctaccaggtcctcctggacctccgggatccagaggtcaacaaggagaaagaggctttaat
ggtcggccaggcgacgccggatactccggacagcttggtaataaaggtgtacgcggtcca
ccaggatttccaggaccatcagggatcgtgaatctaactaaaggcccgtcaggaatttct
ggaagaaaggggcaacaaggaccaccaggacctgcaggcttgaagggcccaagtggaggg
ccaggtgattcaggacctgatggaccacctgggttaccagggtttaaaggcagccctggt
gctcctggcaaggcaggaataccaggaccttctgggtaccctggagttaaaggttttcct
ggcccaaggggttatcttggacatgcaggagatccgggagatcaaggtccttggggacag
ccgggtatcccagggtttccaggacgtccaggagccaaaggtgagccaggaccatcctat
ggacaacctggtccacctggacccaaaggattgccaggagaggatgggccccgtgcaccc
agtgggagtccaggagatccaggggaccgaggacaaccgggattgtcaggagagcctgga
caaccaggcattgttggggaaccaggtcaacggggaggaccaggctaccctgggcctcat
ggcccatcaggttgtccaggtgttccaggtcctccaggtgatcatggtggtctgggacct
ccaggcctacctggcccatatgggcctccaggaccccctggaccaccaggtctccatgga
ctggatggacttagaggtccaaaagggaaaaaaggagggagaggcgcagttatccctggt
ttcccaggaccagatggttttcctggagtcaaaggtatcaggggccagcaaggacctcca
ggaatcagttttccagggcccaaaggccagagggggccacccggcaacacaggtcctcca
ggtttaccaggtgaacctggtatccctggaaaagaatgctacacacctaggatgggaccc
tgtggagatgtagggtatgagggacctcaaggaccccccggtcctgctggggagtgtggc
cctccaggccccagcgttcccttcaaaggggacccaggcctaaatggcctccatgggtta
ccaggccgtaagggggataggggccttccaggacctcctgggtctcagtccaatccaggc
ttttcaggaccaaaaggtgagagaggttctgctggtcctaaaggtcctcctggacccaaa
gggcagattggggtgcctgggccttggggccgtaagggagtaacaggcccacctggtgag
gcaggtgccaaaggtgctcctggtgattcatttcgtggacctccagagatagttccccat
ggactcattgggcctcctggtgacccaggacctagaggataccttggcaatgcaggtccc
cctgggactccaggacgtaaaggacagatgggctcgaaaggatgtgtgggcctcccaggc
agaccaggtccacctggtcgtaaaggccctgttggagacccaggagatgttggtcagcgt
ggatttactggacttcagggtgtcacaggtccacctggtgatcccggtaatccaggctac
agaggggcgtcaaggtcaggcttccttctggttatccacagccagtcagttctggtgccg
tggtgccctgccggcagcagtcagctgtgggtaggctacagtcttgtctacttggaggga
caagagaaggctcacacccaagatctaggtcaagctggctcctgcctccctgtcttctcc
accatgcctttctcctactgcaacaaagctgcctgtcactactcagctcgcaacgacaaa
tcctattggctctccaccaccgctcccatacccatgatgccactctttggcaaggaaatt
agctcccacatcagccgctgtgtggtgtgtgagacagctgcacctgcagtggcttttcac
agccaggatcaaacagtccctgcatgcccacctggctggaggagtctgtggacgggttac
tctttcctcctgcacacagggacaggtgatgaaggtggtggccagtctttgacttcttct
ggtagctgccttaaggatttccgaactcagcccttcatagagtgtcagggtgcgcgcggt
tcctgtcactactttgccaacctctacagtttttggctgactactgtgagtcaaaacgag
cagtttatcagcccgaggtctggtaccatcaaagcagccaacaaacagcgagaaaagacc
agtcagtgtaatgtctgcctcagagagcaataa
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