Plectropomus leopardus (leopard coralgrouper): 121952331
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Entry
121952331 CDS
T07454
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03030
DNA replication
plep03420
Nucleotide excision repair
plep03430
Mismatch repair
plep03440
Homologous recombination
plep03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121952331
03420 Nucleotide excision repair
121952331
03430 Mismatch repair
121952331
03440 Homologous recombination
121952331
03460 Fanconi anemia pathway
121952331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plep03000
]
121952331
03032 DNA replication proteins [BR:
plep03032
]
121952331
03400 DNA repair and recombination proteins [BR:
plep03400
]
121952331
Transcription factors [BR:
plep03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121952331
DNA replication proteins [BR:
plep03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
121952331
DNA repair and recombination proteins [BR:
plep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
121952331
MMR (mismatch excision repair)
121952331
DSBR (double strand breaks repair)
HR (homologous recombination)
121952331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
Extensin_1
DUF223
IBR
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
121952331
NCBI-ProteinID:
XP_042354869
LinkDB
All DBs
Position
13:complement(18373940..18419734)
Genome browser
AA seq
669 aa
AA seq
DB search
MSVKLTQGAVEALFKGEEVNNPVLQVLNMRQIKNGSGPPRFRLMMSDGQHSLSSFLLATQ
LNHLPEENLLAPNCVCMVKKTITNTLSDGRLVVIVLDMEILHSAEETGGKIGSPTPYNTD
GKTSSPQKSDLSGSIPASPPLAAVPGPSHMNTSTFSSSEVSGRGFVGKTPMKSSPMKSSP
MNASPMKASPMKSSPMKSSPMQSSPMKASPMNASPMKGSPMKFSPMKASTSTSPGSSTKV
MPIATLNPYISRWTIKARVTTKSNIRNWSNSRGEGKLFSFEIVDESGEIRITAFNNEVDK
FFPLVEQGKVYYITKGTLKPANKQYTTLKNDYEMTLHAQSSIIPCDDTEGVPTVLCDFVP
ISELENRDKDAIVDVIGVCKDAEDVFRITTKTSREVSKRALNLIDTTGKVVTVTLWGEEA
EKFDGSGQPIVAIKGARLSDFGGISLSALFSSTVMVNPDIPEAFSLRAWYDRGGFALDSQ
SLTEMRSTGTGAKTNWKTLSDIKNENLGHGEKADYFSCIATVLYIRKESSLYQACPSSDC
NKKVIDQQNGLYRCEKCNREYSSFKYRLLLSANLADFGDNQWVTCFQETAEVLLGHNAET
LGQLRETDEAAFDDVFQKTNFTTHIFRNRVKLETYNDESRLKVAVMEIQPVDHREYSRRL
LSNIRKLAG
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtaaaactcacacagggggctgttgaggccctgttcaaaggtgaggaggtgaac
aaccccgtgctgcaggtgctgaacatgcgtcagatcaagaatggctctggtccacccagg
ttcaggctcatgatgagtgatggtcagcactctttgtcctccttcctgctggccacacag
ttgaaccatctgccagaagaaaaccttctagcacctaactgtgtgtgcatggtgaagaaa
accatcaccaacacattgtcagatggcaggcttgtggtgattgtgttggacatggagata
ttgcactcggccgaggaaactggagggaagatcggaagtcccactccatataacacagat
ggtaagacatcatcgccacagaagtcggatttaagtggctctatcccggcatctcctcca
ttggctgcagtacctggaccctcccacatgaacaccagcaccttttcttcttccgaagtc
agcggaagaggttttgtgggaaagacacccatgaagtcttcacccatgaagtcttcaccc
atgaatgcttcacccatgaaggcttcacccatgaagtcttcacccatgaagtcttcaccc
atgcagtcttcacccatgaaggcttcacctatgaatgcttcacccatgaaaggttcaccc
atgaagttttcacccatgaaggctagtaccagcacctccccaggttcttcaacaaaagtg
atgcctattgcaaccctcaacccctacataagcaggtggactatcaaagccagagtcact
accaagtccaatatccgcaactggagtaactcaagaggagaaggcaaactcttctccttt
gagatagtggatgagagtggagaaatcaggatcacagccttcaacaacgaagtggacaag
tttttccctctagtggagcaaggcaaggtgtattacatcactaagggtacgctgaaacca
gccaacaaacagtacaccacgctgaagaatgactacgagatgacgctacacgctcagtca
tccatcattccttgtgatgacactgagggcgtccctacagtgctctgtgactttgtgccc
atctcagagctggagaacagagacaaagatgccattgttgatgtgattggagtgtgcaag
gacgctgaggatgttttccgtatcaccactaagaccagcagagaagtctccaagagggcc
ctcaacttaatagacacaactggcaaagtggtgacagtcacactgtggggagaggaggcg
gaaaagtttgacggctctgggcagcccattgtcgccatcaaaggagcccgcttgtctgat
ttcgggggcatctctctctctgctttgttcagttcaacagtcatggtcaacccagacata
ccagaggccttcagtctgcgggcctggtatgaccggggaggctttgcactcgacagccaa
tccctgacagagatgaggtcaacgggcaccggagcaaagacaaactggaaaacactgagt
gacatcaagaatgaaaacttggggcatggagagaaggcagattatttcagctgcatagcg
acagtgctgtacattcgcaaggagagtagtctgtaccaggcctgtccatcttcagactgc
aacaagaaggtcatcgatcaacagaatggattgtaccgctgcgaaaagtgtaaccgagag
tactccagcttcaaatacagactcctgctttctgccaacttggcagactttggggataac
cagtgggtgacatgcttccaggagacagctgaggtcctgttaggtcacaatgcagagaca
ctgggacagctcagagaaacagatgaggctgcattcgatgacgtctttcagaaaaccaac
ttcacaactcacatttttcgaaacagggtcaagctggagacatacaacgatgagagtcga
ttgaaggtagccgtaatggaaatccagccggtggaccaccgggaatacagcaggagactc
ctcagtaacatccgcaaattggccggctga
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