Plectropomus leopardus (leopard coralgrouper): 121952452
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Entry
121952452 CDS
T07454
Symbol
hmgb1a
Name
(RefSeq) high mobility group protein B1a
KO
K10802
high mobility group protein B1
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03410
Base excision repair
plep04140
Autophagy - animal
plep04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121952452 (hmgb1a)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121952452 (hmgb1a)
09143 Cell growth and death
04217 Necroptosis
121952452 (hmgb1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plep03036
]
121952452 (hmgb1a)
03400 DNA repair and recombination proteins [BR:
plep03400
]
121952452 (hmgb1a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plep04147
]
121952452 (hmgb1a)
Chromosome and associated proteins [BR:
plep03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
121952452 (hmgb1a)
DNA repair and recombination proteins [BR:
plep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
121952452 (hmgb1a)
MMR (mismatch excision repair)
Other MMR factors
121952452 (hmgb1a)
Exosome [BR:
plep04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
121952452 (hmgb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
HMG_box_5
NOA36
Motif
Other DBs
NCBI-GeneID:
121952452
NCBI-ProteinID:
XP_042355079
LinkDB
All DBs
Position
13:complement(18583073..18587220)
Genome browser
AA seq
212 aa
AA seq
DB search
MGKEHGKPRGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSAKEKGKFE
ELARQDKARYEREMMSYVPPKGGKKKKYKDPNAPKRPPSAFFIFCSEYRPKVKGETPGLS
IGDVARRLGEMWNGTASEDKQPFERKAAKLKEKYEREVAAYRAKSKAGGGGGGGAAAAAG
KAPAKAEKKDDDDDDEDDDDDDDEEDYDDDDE
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagaacatgggaagccgaggggcaagatgtcctcctatgcgtattttgtccag
acctgccgggaggagcacaagaagaaacaccccgaagcttcggtcaactttgcagagttc
tccaagaagtgctctgagcgatggaagacaatgtctgccaaggagaaaggaaaattcgaa
gaactggccaggcaggacaaggcacgctacgagagggagatgatgagctatgtcccaccc
aagggaggaaagaagaagaagtacaaggaccctaatgcccccaagagacccccatccgcc
ttcttcatcttttgctcagagtatcgccctaaggtgaaaggtgagacccctggtctgtcc
attggagatgttgccaggaggctgggtgagatgtggaacggtactgcatcagaggacaag
cagccctttgagaggaaggcagccaaactgaaggagaaatatgaaagggaagtcgcagca
tatcgtgcaaagagcaaagctggtggcggaggtggtggcggggcagcggcggcagcagga
aaagccccagccaaggcagagaagaaggatgacgacgatgatgatgaggacgatgacgac
gacgacgacgaggaagactatgatgatgatgacgagtaa
DBGET
integrated database retrieval system
