Plectropomus leopardus (leopard coralgrouper): 121954262
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Entry
121954262 CDS
T07454
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121954262 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plep03400
]
121954262 (msh6)
DNA repair and recombination proteins [BR:
plep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
121954262 (msh6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
121954262
NCBI-ProteinID:
XP_042357567
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All DBs
Position
15:complement(19478335..19488042)
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AA seq
1385 aa
AA seq
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MAKQSSLFNFFTKSPTAVSKPKPSPSPTEADLPSSVEKSSSSPKEQAKQTAQQQPAKSSK
VKPKSNDKSAKGGFSKLFGDKASATKQSSNTCSFSAGALVWAKLEGHPWWPCMVVPQPLT
GQQMRGRGREQRIHVHFFDEPATRGWVSTKYIREYQGSDSSDAKTGGVFFSGKPVIRRAM
ALADEVMFDSPEKRLKMPVCMDPSDEEEDDDDEEEEMELDKSTVTDEEVSDEEEQKNEKV
KPPKVGRRSSRASTEKGNKAKRRRIIVASDSDGSDEEFKPEQAASSSEDEEEAATVTSEE
EEKESSQESEVESPIKLVKRKRPAEKTASTKAKMPIMQSNTPKRAPANIALDTKSRLSAF
SAPENFESQTNGSGTSGSATIWDHEKLEWLQDGKRKDGKRRRQSEDDYDPTTLYLPEDFS
NRNTPGMRRWWQLKSQMFDTVIFYKVGKFYELYHMDAVIGVNELGLTFMKGTWAHSGFPE
IGFGRFSDVLVQKGYKVARVEQTETPEMMEARCKTMAKPTKFDRVVRREVCRIITRGTQT
YSVLDGAPSESQSKFLLSLKEKAEEESSGRCRTYGVCFVDTSVGYFHVGQFPDDRHCSRL
RTLIAHFAPAEVLFEKSNPSIETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSEEDY
FRETADKDQGTGNNVLPALLKKMTSESDSLCLTPKEGYELALSALGGCIFYLKKCLVDQE
LLSLANFEEYVPVDVELEKAAGPASFFAKTRQRMVLDGVTLANLEIFLNGSGGTEGTLLE
RLDTCCTPFGKRLLKQWLCAPLCNPTSIKDRLDAVDELMGAQAQATEVSDLLKKLPDLER
LLSKIHSIGTPLKSQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIITVLAPVSG
ESQSTLLRQVASLKGEKGGLFPDLSAELRRWETAFDHQKARTTGVITPKAGFDPEYDQAL
TAIKSCERELQDYLDRQKKRLGCKNMSYWGTGRNRYQMEVPDSVSERNIPEEYEVKSTKK
GWKRYVTKETERLFSELQGFEEKRDAALKDCMRRLFYNFDKNYRDWKTGVECMAVIDVLL
ALSRYSQGGDGPMARPQVVLPESDDQVAPFLDLIGSRHPCVTKTFFGDDFIPNDIYIGCS
GSSDTDEEKEHASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVDRVFT
RLGASDRIMAGESTFFVELSETASILHHATTHSLVLLDELGRGTATYDGTAIASAVVKEL
AEKICCRTLFSTHYHSLVEDYANCPAVRLGHMACMVENECEDPSQETITFLYKFISGACP
KSYGFNAARLASLPEEVIQSGHRKAREFEKSTISLRLFKKLCQYAEDASLGNTHFASLVQ
MLNTL
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctcacttttcaatttcttcaccaagtctccgacggcggtctccaag
ccgaagccgagtccctctccgaccgaggcagacctgccgtcctccgtggagaagtccagc
tcctctcccaaagagcaagctaaacagacagcgcaacagcaaccagccaagagcagcaaa
gttaaaccgaaaagtaacgacaagtctgcaaaaggggggttcagtaaactatttggcgac
aaggcctctgcaaccaaacaaagcagtaacacatgctcattcagtgctggtgcccttgtg
tgggcaaaactcgagggacacccctggtggccatgcatggtggtgccccaacctctgact
ggacagcagatgaggggtcgtggtcgggaacaacgcatacatgtccatttcttcgatgaa
cctgctaccagaggatgggtcagcaccaaatatataagagagtaccaaggctctgacagc
agcgatgctaaaacaggaggcgtgttcttcagcggcaaacctgtaatccgtcgtgcaatg
gcgctcgctgatgaagttatgtttgacagccctgaaaaaagattaaagatgcctgtctgt
atggatccgtctgatgaggaagaggatgatgatgatgaagaagaagaaatggagcttgac
aagtcaacagtgactgatgaagaggtcagtgatgaggaagaacagaaaaatgagaaagtg
aagccgcccaaggtcggtcgacgttcatcccgcgcttcaacagaaaagggaaataaggcc
aagcgccgccgcataatcgttgcatctgacagtgatggatcagatgaggaattcaaacct
gaacaagctgcttccagcagtgaggatgaggaggaagcagcaactgtaaccagtgaagag
gaggaaaaggaaagctcccaagagtcagaagtggaaagccccatcaagcttgtaaaacgc
aaacgtcctgcagaaaagactgcttctacaaaagcaaagatgcctattatgcagtctaac
accccaaaacgagctccagcaaatattgcgctcgacacaaagtctcgtttatcggcgttc
tctgccccggagaactttgagagccagacaaatggatcaggcaccagtggaagcgccaca
atttgggaccatgagaagctggagtggttgcaagacggcaaaaggaaagatggcaaaagg
cggcgacagtcagaggatgactacgatcccaccacactctatctgccagaagacttttca
aacagaaacactcctggtatgcgtcggtggtggcaactcaaatcccagatgtttgacaca
gtcattttctacaaggtggggaagttttatgagctgtaccacatggatgctgtgatcgga
gtcaacgagctgggtctaacgttcatgaaaggaacctgggcacactccggcttcccagag
atcggctttgggcgtttctcagatgtattggtccagaaaggctacaaggtggctcgtgtg
gagcagacggagaccccagaaatgatggaagcacgctgtaagaccatggctaagcccaca
aaatttgaccgtgtggtgagaagagaggtgtgccggattatcacacgcggcacccaaacc
tacagcgtgttggatggtgctccgtctgagagtcagagcaagttcctgctgagcttaaag
gaaaaggctgaagaggaaagctccggtcgttgccgtacgtacggagtctgctttgtagac
acatctgtcggttattttcacgttggtcagttcccagacgatcgtcactgctcacgtctg
cgcacgctcatagcgcacttcgcccctgctgaagtgctctttgaaaagagtaacccatcc
attgaaacacgcaaaatcctcaaggcctctctgtcctctgctctgcaggaaggacttaat
gcaggcactcagttctgggatgctcagaagactctgaaaaccctttcagaagaagattac
ttcagagagactgctgacaaggatcaggggacagggaacaacgtccttcctgctctttta
aaaaagatgacctctgagagtgattcgctgtgccttacccctaaagagggctatgagctg
gctctgtcagctctgggtggatgcattttctacctgaagaaatgtctggtggaccaagag
ctgctctctttggccaattttgaggaatatgttcctgttgatgttgagctggagaaagct
gctggacctgccagtttctttgccaagactcgtcagcggatggtccttgatggagtgact
ctggcaaacttggaaatctttctgaatgggtcaggaggaacagaagggacgctgctggag
cgcttggacacctgctgtaccccgtttggaaagaggctgttgaagcagtggctgtgtgct
cctctgtgtaaccctacatccatcaaggacagactggacgcagtggatgaactgatggga
gctcaggcccaggcgactgaggtttcagacctgctgaagaagcttccagatttggagcgt
ctcctgagtaaaatccacagcattggcactcccctgaagagccaggatcacccagacagc
agggcagtactctacgaggaggtcacctacagcaagcgcaagatagcagacttcctctca
gcactggaaggtttcaaaaccatgcaggagatcatcactgtcctcgcgccagtttcaggt
gaatctcaatccacattgctgcgtcaagttgccagtctgaaaggcgaaaagggtggcctg
tttcccgacctctctgctgaactgagacgctgggagacggccttcgaccaccagaaagct
cgcactaccggtgtcataacccctaaagctggctttgacccagagtatgaccaggctctg
actgcgatcaagagctgtgagcgagagctgcaggactacctggacagacagaagaagaga
cttggctgtaaaaacatgtcctattggggaactgggcgaaaccgctaccagatggaggtg
cccgacagcgtctcagagaggaacattcctgaggagtacgaggtgaagtctacaaagaaa
ggctggaagcgttatgtgaccaaagagactgagcggctgttctcagagctgcagggattc
gaggaaaagagagacgcggccctgaaagactgcatgaggaggctcttctacaactttgac
aagaactacagagactggaagactggtgtggagtgcatggcagtgattgatgtgctgctg
gccttgtcacgctacagtcagggcggagatggaccgatggccaggccacaggtggtgctt
cctgagagtgatgatcaggtagcacccttccttgacctcattggatcccgccacccctgt
gtcaccaagacctttttcggcgacgacttcatccctaatgacatctacattggctgctct
ggcagcagtgacactgatgaggaaaaagagcatgcctcttgtgtcctcgtcacggggcca
aacatgggaggaaagtctactcttatgagacagtgcggacttgtgatcatcctcgctcag
ctgggttgctatgttcctgctgagagcctgcgcttcacaccagttgacagagtcttcact
cggctgggagcctcagatcgtatcatggccggagagagtaccttctttgtggagctcagc
gagactgccagcatcctgcaccacgccactacacactcgctcgtgctccttgatgaatta
ggaaggggcacagccacatatgacggcacagcgattgccagtgctgttgtgaaggagctt
gctgagaagatctgctgtcgcaccctcttctctacacattaccactccctggtggaggac
tacgccaactgccctgctgtgcggttgggccacatggcgtgcatggtggagaatgaatgt
gaggatccaagtcaggagaccattacattcctctacaaattcatctctggtgcctgtcca
aagagttacggcttcaacgctgctcgactcgccagcctgccagaggaggtcatccagtca
ggacacaggaaggccagagagtttgagaagagcaccatcagcctcagactcttcaagaag
ctctgccagtatgctgaggatgcttcactgggcaacacacactttgcatcactcgttcag
atgcttaacaccctgtag
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