Plectropomus leopardus (leopard coralgrouper): 121955747
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Entry
121955747 CDS
T07454
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03008
Ribosome biogenesis in eukaryotes
plep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121955747 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
121955747 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plep03021
]
121955747 (xrn2)
03019 Messenger RNA biogenesis [BR:
plep03019
]
121955747 (xrn2)
03009 Ribosome biogenesis [BR:
plep03009
]
121955747 (xrn2)
03016 Transfer RNA biogenesis [BR:
plep03016
]
121955747 (xrn2)
Transcription machinery [BR:
plep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121955747 (xrn2)
Messenger RNA biogenesis [BR:
plep03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
121955747 (xrn2)
Ribosome biogenesis [BR:
plep03009
]
Eukaryotic type
Pre-60S particles
RNases
121955747 (xrn2)
Transfer RNA biogenesis [BR:
plep03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
121955747 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
121955747
NCBI-ProteinID:
XP_042359752
LinkDB
All DBs
Position
16:complement(24584875..24634121)
Genome browser
AA seq
974 aa
AA seq
DB search
MGVPAFFRWLSRKYASIIVHCVEEKGKECNGVRVPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGAELVEEKHRIREEIIQRGGYLPPEEIKERFDSNCITPGTEFMDNLAQCLRYYVAD
RLSNDPGWKNVTVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCGQLGHEIKDCEGMAREKQGQHDEFADTMPAAEQE
FIFIRLCVLREYLARELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKDVVHKTGGYLTQNGYVNLERVEMIMQAVGVAEDNIFKKRKEDDESFKRRMKE
KRKRMKAEQRGPAYLTTGQFAPQALGRRDRPEAVQNARHQAFDMRMQHNRDAAQSLKASI
RNGSNSAGPSGSADNRGMKRKAEDSDSEPEPEDNVRLWEDGWKQRYYKTKFDVDVTDEDF
RKKVVRSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKEMFTEFEKDTKPFKP
LEQLMGVFPAASGNFLPSTWRNLMSSPDSSIIDFYPDDFAIDLNGKKYAWQGVALLPFVD
ERRLRAALADVYPDLTTEEVKRNSLGSDLLFLGKSHPLFDFIHELYRTESHEGTEIPAEL
CHGIQGTLNLDDDPILPDKSVMSPIPMLRDISQNTAIGVKFKDPQYADGFVFKAVLLSGA
KIPNKVLKPGDWEKGNREPWRPQLGFNPNRQQAHLDQSGFRALSHSLNRNQHGGGQYSNT
PPPGSYQQGNYRPPHHQPFQHSRQNSLLGGPPSFHQPQYPRQQQQPAYGGSRGHGWDRAT
QAQQSAYQQNMSRAQGGAAAGSYQQRFDNRRDDWRDRRDDRRDDRRDNRGQLHQGYSSGR
GYPPPPPSRRYNWN
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgtttttccgttggcttagccgaaaatatgcgtcaatcattgtgcat
tgtgttgaggagaagggaaaagaatgtaatggagtccgtgttcctgttgatacaaccaag
ccaaatcccaacgaggtggaatttgacaatttgtacctggacatgaacgggatcattcac
ccatgcacacatccagaagacaaacccgctcccaaaaatgaagatgagatgatggtcgcc
attttcgagtacatcgaccgcctgttcaacatcgtgcggcccaggagagttctctacatg
gccatcgatggagtggctccacgggccaagatgaaccagcagcgatctcggcggtttcgt
gcttccaaagaaggagcagagttggtggaagagaagcaccgcatcagggaggagatcatc
cagagaggaggttatcttccacctgaggagattaaagagaggtttgacagcaactgcatc
actccaggaacagagtttatggacaacctggcacagtgtcttcgatactatgttgcagac
agactcagcaatgatccaggatggaagaacgtcacggtcttcctgtctgatgccagtgtt
cccggtgaaggtgaacacaaaataatggacttcatcaggagacaaagagctcaacccaac
cacgaccccaacacacaccactgcctgtgtggagctgatgctgacctgatcatgctgggc
ctggccacccacgagccaaacttcaccatcatcagagaggagttcaaacccaacaagcct
cgtccctgcgctctctgtggacagctgggtcatgaaatcaaagattgtgaggggatggcc
agggagaaacaaggacagcacgatgagtttgcagacacgatgccagcagctgaacaggag
ttcatatttatcagactctgtgtgctgcgggagtacttggcccgagagctgaccatggcc
agcctgccatttacctttgactttgagagaagtgttgatgactgggtcttcatgtgcttc
tttgttggtaacgactttctgccgcacctgccgtccctagagatcagagagggagcaata
gatcggctggtcaacatctacaaagacgttgtgcacaaaactggaggctacctgacacag
aacggctatgtcaacctggagcgagtcgagatgatcatgcaggcggtgggcgtggctgaa
gacaacatcttcaagaaacgcaaagaggacgatgaaagctttaagagaagaatgaaagag
aaacgaaagaggatgaaggcagagcagcggggccccgcttacctgaccacgggccagttt
gcccctcaggctctggggagaagagatcgacctgaggccgtccagaacgcccggcaccag
gcctttgacatgaggatgcagcacaacagggatgctgctcaatccctgaaggcgtcgata
aggaacggtagcaattctgcagggcccagcggcagcgcagacaacagggggatgaagaga
aaggctgaggacagtgacagcgagccggagcctgaagacaacgtcaggttgtgggaggac
ggctggaagcagagatattacaagaccaagtttgacgtggacgtgacagatgaggatttc
agaaagaaggtggttcggtcgtacgtggagggtctctgctgggtgctgcgctactactac
cagggctgtgcctcctggaagtggtacttcccgttccactacgctccatttgcctccgac
ttcaaagatatcaaagagatgttcactgagtttgagaaggacactaaaccgtttaagcca
ctggagcagctgatgggagtgtttcctgccgccagcggcaacttcctgccttcaacatgg
cggaacctcatgagcagtccggattcctccatcatcgacttctacccggacgactttgcc
attgatctcaacggcaagaaatacgcctggcagggggtggccttgttgccttttgtggat
gaacgacggctgagggcggctctggctgatgtctaccctgacctcacaaccgaggaagtg
aaaagaaacagtctgggaagcgacttgttgtttctcgggaaatctcacccactctttgac
ttcatccatgaactctaccggacagaatctcacgagggcactgagatccccgcagagctg
tgccacggaatccaaggtacattaaatcttgatgacgacccaattctaccagataagtca
gtgatgtcacccatcccaatgctgcgtgatatttcacagaacactgcgatcggagtgaag
ttcaaggatccccaatatgcagatggctttgtgtttaaggcggtcctcctttccggagcc
aagatccccaataaggtcctgaagccaggggactgggagaaaggcaacagggaaccatgg
agaccccagctgggcttcaacccaaacagacagcaggctcacctggaccagtccggcttc
cgggctctgagtcatagtctgaacagaaaccaacatggcggaggacagtacagcaacacc
ccaccgccgggcagctaccaacaaggaaactaccgtcctccacaccaccagcctttccaa
cattccagacaaaacagtttgctgggagggcctccctccttccaccagccacagtaccca
aggcagcagcagcaaccggcgtacgggggcagcaggggtcacggttgggatcgggccacg
caagcacagcagtcggcgtaccagcagaacatgagccgcgcacagggaggggcggcggca
ggcagctaccagcagcgcttcgataatcgtagagacgactggcgcgatcgcagggacgat
cgcagagatgatcgcagggacaaccggggacaactgcatcagggctacagctctggcaga
ggttaccctcctcctcctccatccagacgatacaactggaattag
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