Plectropomus leopardus (leopard coralgrouper): 121955944
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Entry
121955944 CDS
T07454
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121955944 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plep03019
]
121955944 (cpsf2)
Messenger RNA biogenesis [BR:
plep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121955944 (cpsf2)
U7-dependent histone pre-mRNA processing factors
121955944 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
121955944
NCBI-ProteinID:
XP_042359974
LinkDB
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Position
16:complement(17863757..17877003)
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AA seq
788 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESISRPNLLITDSFNATYVQPRRKQRDELLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHSLADLARVQSPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRTT
PGTLARYLIDNPGETMLDLEVRKRVKLEGKELEEYLEKEKVKKEAAKKLEQAKEVDVDSS
DESDMDDDLDQPAAVKTKHHDLMMKSEGSRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRLEEFLVPELQATEEEKNKLESGLTNGEEPMDQDLSVVPTKCISSMENLEIRARVTYID
YEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFSKDIKVYTPKLQETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVMLEEGVKDEVEDGG
DLAMDVAPDPGVDQNATAVAAQRAIKNLFGEDEKEVSEENDVIPTLEPLPPHEIPGHQSV
FINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCDDYYKIREL
LYQQYAVV
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccattatcaagctgacagccgtgtcaggggtccaggaggagtcggccctgtgt
tacctgcttcaggtggatgaattccgcttccttctggactgtggctgggatgagaacttc
tccatggacatcattgatgcaatgaaacggtatgttcaccaggtggatgctgtgctcctc
tcccaccctgaccctatacacctgggagccctgccgtacgctgtagggaaactgggtctg
aactgtactatctatgctacgatccctgtctacaagatgggtcagatgttcatgtatgat
ctgtaccagtctcgaaacaacagtgaagatttcactctgttcaccctggatgatgtggac
agtgcttttgataaaatccagcagttgaaatactctcagattgtcaatctgaaaggaaaa
gggcacggtctgtccattactcctctcccagctggtcacatgattggaggcacgatttgg
aaaattgtgaaggacggagaggaggagattgtttatgctgtggacttcaaccacaagaga
gagatacacctcaacggctgcacgctggaaagcattagtcgtcccaacttacttatcaca
gactccttcaatgctacatatgtacagccacgtcgtaaacagagagatgagctgctcctc
acaaatgtaatggagacccttcgtggtgacggtaatgtccttattgccgtggatacagct
ggacgtgtgttggaactggctcaactcctggaccagatctggaggacaaaggatgctgga
ctgggagtctacccgctagctctgctcaacaatgtcagctataatgtggtggagttttcc
aagtcccaggtggagtggatgagtgacaagctcatgaggtgttttgaagacaagagaaac
aacccctttcagttccgtcacttgaccttgtgtcacagtctggcagacctggctcgtgtg
cagagccctaaggtggtgctttgcagccagccagacctggagtctggcttttctagagaa
ctctttatccaatggtgccaagacgccaaaaactccgtcatcctgacctaccgcaccaca
cctggcaccctggctcgctacctcatcgacaaccctggggagacgatgctggatctggag
gtgaggaaaagagtgaagctcgaaggcaaggagctggaggaatatcttgaaaaggagaaa
gtaaagaaagaagctgctaaaaagcttgaacaagcaaaagaggtggatgtagactcgagt
gacgagagcgatatggacgatgatctggatcagccagctgcagtgaaaactaaacaccac
gacctgatgatgaagagcgaggggagccgcaaaggcagcttcttcaaacaagccaaaaag
tcatatccgatgttccctacacatgaagagagaatcaaatgggacgagtacggggagatc
atcaggctagaagagtttctggtccctgaactacaagccacagaggaggagaaaaacaaa
ttggagtcagggttgaccaatggggaggagcccatggaccaggatctctccgttgttccc
actaaatgcatctccagtatggaaaatcttgaaattagagcgagagtaacgtacatagac
tacgaaggtcgctctgatggcgactccattaagaagattattaatcagatgaagcccaga
cagctggtgatcgttcatgggccgccagaagccagtctcgacctggctgagtcctgcaag
gctttcagcaaggacatcaaagtctacacacccaaactgcaggagactgtagacgccacc
agtgaaacacatatctaccaggtgcggttgaaagactccttggtgagctccctgcagttc
tgcaaggccaaggacacggagctggcttggatcgatggtgtgctggacatgcgcgtggtt
aaggtggacacgggtgtaatgctggaggagggtgtgaaagacgaggttgaggacggcggt
gacttggccatggatgtcgcacctgatcctggcgttgaccagaatgccacggcggtggca
gcacagcgcgccataaagaacctgtttggggaggacgagaaagaggtgtcggaagagaat
gatgtcattcccacactggagccactgccaccacacgagattccagggcatcagtcggtg
tttatcaacgagcctcgcctgtctgacttcaagcaggtcctgctgagagagggcatccag
gccgagtttgtgggaggagtgctggtatgcaacaacatggtggccgtccgcaggacggag
gccggacgcattggcttggaaggctgcctgtgtgacgactactataagatccgggagctg
ctgtatcagcagtacgctgtggtatag
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