Plectropomus leopardus (leopard coralgrouper): 121956528
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Entry
121956528 CDS
T07454
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121956528 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plep03019
]
121956528 (xab2)
03041 Spliceosome [BR:
plep03041
]
121956528 (xab2)
Messenger RNA biogenesis [BR:
plep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121956528 (xab2)
Spliceosome [BR:
plep03041
]
Complex B
Other components
Prp19-related factors
121956528 (xab2)
Complex C
121956528 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
TPR_MalT
NRDE-2
SNAP
TPR_1
Motif
Other DBs
NCBI-GeneID:
121956528
NCBI-ProteinID:
XP_042360727
LinkDB
All DBs
Position
17:15647660..15656813
Genome browser
AA seq
850 aa
AA seq
DB search
MPSLNGNPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDPGYEEINNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGKDEDDDVDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVETEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEIDIDDDDEDEDDEDQGPEEVQLEQKSVP
TAVFGGLKDD
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgctaaacggaaaccccgatgttatgtttgaggacgatgatctgccttatgaa
gaggagattatcagaaacccatactcagtcaagtgctggatgcgttacattgaatttaaa
caaaacggagccaaatccaccctcaacatgatatatgaaagggccctaaaagagctgcct
ggcagctataaactttggtacaattatctgagagagagacgtaaacaagtcaaagggaaa
tgtgtcactgatccaggctatgaagagatcaataattgccatgagagggcactggtgttc
atgcataagatgcccagaatatggcttgattactgccagttcctcgtgtcccagtgcaag
atcacaagaagtcggcaaacatttgaccgtgcgctcagagctctccctgttactcagcat
ccacgcatctggcctctgtatctccgctttgtccgtaacctgcccctgcctgagactgcc
atccgggtgtaccgcaggtaccttaagctatctccagagaatgcagaggagtatattgac
tacttacggtctgttggccgcttggatgaagcagctgtgcgacttgcagctgttgtcaat
gacgaaagctttgtgtccaaagagggcaagtctaactatcaactgtggcatgagctctgt
gacctgatctcccagaaccctgataaagtgacctctctcaatgttggggccatcattcga
ggaggcctcactcgcttcacagaccaacttggaaaactctggtgctctttagctgactat
tacataaggagtggtcactttgagaaggctcgtgacgtgtatgaggaggcaatccttaca
gtggtaacagtaagggatttcacacaagtgtttgatagctatgcccagtttgaagagagc
atgattgcagcaaagatggagaccacttctgagatggggaaggatgaagatgatgacgta
gacatggagctaagactggcacgctttgagcagctgatagcccgacggcctctgctgttg
aacagtgtactactgcggcagaatcctcacaatgtccacgagtggcacaagcgggtaaaa
ctgtatgacggcaatccacggcagattatcaacacgtacacggaggcagtgcagactgtg
gatccaatgaaggccacggggaagcctcactctctctgggtttcctttgctaagttctat
gaggaaaatgagcagctggatgatgccaggacaatttttgagaaggccaccaaggtgaac
tacaagcaggtggatgaccttgctgcggtgtggtgtgaatacggagagatggagctacgc
catgagaactatgaacaggcactgcgcatactgaggaaagctacagccatcccatcaaag
aaagcagagtactttgatgcatctgagccagtccagaacagagtttacaagtccttgaag
gtctggtctatgctggcggacttggaggagagtctcggcacattccagtctacaaaagca
gtgtatgatcgcatcattgacctccgcattgccacgccacagatcatcatcaactatgcc
atgttccttgaagagcacaactactttgaggaaagcttcaaggcatatgagcgtggcatt
gctctcttcaggtggccgaacgtttatgacatctggaacacgtacctcaccaagttcatt
gatcgttacgggggcaagaagctggagagggctagagatttgtttgaacaagccttagat
ggctgtcctgccaagtttgccaagaccatttacctgttgtatgccaaattggaggaggga
tacggattggcacgccacgccatggctgtatatgaaagagcaacacaggcagtagaaact
gaggagagacatcacatgttcaatatctacatcaagagagcagctgaaatttatggggtc
acgtataccagggcaatttaccagaaagctattgaggtccttcctgatgagcatgcaagg
gacatgtgtctgcgatttgctgacatggagagtaaacttggcgagattgatcgcgccaga
gcaatctactcctactgctcccagatctgtgacccaagggtgactgcaaacttctggcag
acctggaaagaatttgagatccgccatggaaatgaagacacgattagagagatgctgagg
atcaaacgcagtgtccaagccacatacaacacacaggtcaacttcatgtcctctcagatg
ctgaaggccacaacaagctccacaggcacagtgtcagatctcgctccaggccaaatggga
attgatgacatgaagatgctggagcagaaagcacaacagcttgctgctgaggccgaacaa
gacaaacctaagcccaaagagaagatcctctttgtcaggagtgacacatctcgcagtgag
ttggctgaactttcgaaacaagccaatcctgatgagatcgacattgatgatgatgacgaa
gatgaagacgacgaagaccagggaccagaggaggtgcagcttgaacagaagagtgtcccc
acagctgtctttggagggcttaaagatgactga
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