Plectropomus leopardus (leopard coralgrouper): 121957385
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Entry
121957385 CDS
T07454
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121957385 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plep03021
]
121957385 (smarcc1b)
03036 Chromosome and associated proteins [BR:
plep03036
]
121957385 (smarcc1b)
Transcription machinery [BR:
plep03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121957385 (smarcc1b)
Chromosome and associated proteins [BR:
plep03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121957385 (smarcc1b)
PBAF complex
121957385 (smarcc1b)
GBAF(ncBAF) complex
121957385 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
SpeFL
DUF919
Motif
Other DBs
NCBI-GeneID:
121957385
NCBI-ProteinID:
XP_042361862
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All DBs
Position
18:17381542..17390547
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AA seq
955 aa
AA seq
DB search
MATMSGGTNLGIPGTSQTSSGTSTHRKKDSSPSARFWESPDTLAQLEVVRQWIGKHYKKY
VLVDAPSCQALAAVILQLLQFQEDAFGRQATSPALTKLPAQYFLDLRPGGGLCHILGTAY
KFKAEQGWRRFDLQNPSRTERNVEMFGAIERALIQNKCMSLPVVYVDPTLDEELTSRLTD
IITKHQATLTEDRTLASHHICPSPASTEEDEWMRPVMRKDKHVLVHWGMHPDSYDSWLSA
SDVEGEVEEPPHSEKPWRVHAGWVLDTDVFNEWMNEEDYCVDERNEPIILRRRIHLRDDQ
DSKPTPSKKRRRSPSPPASEGRKKGKKGRRRGQQEEEPEEDLTKDMEDPTPVPNMEEVIL
PKNVNLKKDSENTPVKGGTMADLDEQEDDFPGREDEEGRAEIPRLSEGEDNITEQTHHII
IPSYTSWFNYNSTHSIEKRALPEFFNGKNKSKSPEIYLAYRNFMIDTYRLNPQEYLSSTS
CRRNLTGDVCAVMRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQ
HKPLQVSASQHMLYFPEKSREKPSDCQNFGLRSDIYTKKHPKTKGASAGREWTEQETLLL
LEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSQS
ENPVMSTVAFLASVVDPRVASSAAKAALEEFSRVQEEATDKVSETSNQPDKTESMDADKI
ETNSTSHQVPSRADGLKAEPSGAKVEGDLVKRENAENILAEDRDGRGDDDESLGRGDVDE
GRVMEQDLVEGSVATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRH
FEELETIMDREKEALEQQRQQLLSERQTFHTEQLKQAEMKVRQQREQHSQPGYTMQQSAL
PPPSGQAMPNRMMPGGGNTQVMAPRHPGAPNGMYPSSQPDGIAPAQPGPPASSHS
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggccacaatgtccggaggaacaaacctcggcattcccgggacaagccaaaccagctcc
ggaacatccacacaccggaaaaaagacagcagtccgtccgccaggttctgggagagccca
gacactttagcccagctggaggtggtgcgacagtggatcgggaagcactacaaaaagtat
gtgctggtggatgctccatcatgtcaggctctggctgcagtgatcctacagcttcttcag
tttcaagaggatgcctttggcagacaagctaccagtcctgcgctcaccaaactgcctgca
cagtacttcttggacctgcggccagggggtggactctgccacatccttggcactgcctac
aagttcaaggctgaacaaggctggcgcaggtttgacctgcagaatccatccagaactgaa
aggaatgtcgagatgtttggtgctatcgaaagagcactgatccagaacaaatgtatgtca
ctgcctgtggtatatgtggaccctacactggatgaggagctgacgagcagacttacggat
attattaccaaacaccaggctacactcactgaggaccgaacgctcgccagtcaccacatc
tgcccctcacccgcttcgacagaggaagatgaatggatgcgtcctgtaatgcgtaaagac
aaacatgttttggtacactggggcatgcaccctgacagttacgacagttggctgtccgcg
agtgatgttgaaggagaggttgaagagccaccacattcagaaaagccgtggcgggtccat
gctggctgggttctggacacagatgttttcaacgaatggatgaatgaagaggactattgt
gtggatgagaggaatgaaccaataattctccgacgacgtattcacctcagagacgaccag
gactccaaacccaccccttccaaaaagagaagacgctccccctctcctcctgcctctgaa
ggcaggaagaaaggaaagaaggggagaaggcgtggacaacaggaggaagagccagaggag
gacctgaccaaagacatggaggaccctacccctgttcctaacatggaggaggttatacta
cccaaaaatgtcaacctgaagaaggacagtgagaatactcctgtcaaaggagggaccatg
gctgacctggatgaacaggaggatgacttcccaggaagggaagatgaggagggtagagcg
gagatacctcgtctgtcagagggagaggataacatcacagaacaaacccatcacatcata
ataccaagctacacatcttggttcaattataatagcactcactccatagagaaacgtgca
ttgcctgaattcttcaatggaaagaacaagtccaaatctccagaaatctacctggcgtac
cgtaacttcatgatcgacacataccggctcaacccccaggaatatctcagttcaacgtct
tgcagacgcaacctcactggagacgtctgtgcagtcatgagggttcatgcgtttttggag
cagtggggtttgattaactaccaggtggatgcagagagcagaccactccccatgggaccc
ccacccaccccccattttaatgttttggctgacacaccgtccgggctggcccccctacaa
cacaaacccctgcaggtgtcagcctctcagcacatgctgtatttcccagaaaagagcaga
gagaagccttcagactgccagaactttggtcttcgctccgacatctacaccaagaagcac
cctaagacgaaaggagcaagtgcaggaagggaatggacagagcaagagacgcttttgctt
ttagaggccttagaggtctacagagatgactggaacaaagtatccgagcatgtaggctcc
agaactcaggacgagtgtatcctccacttccttcgtctgccgatagaagacccttaccta
gaggactcatctgcctccctcggcccactagcgtaccagcctgtgcctttcagtcaatca
gaaaaccccgtcatgagcactgtggccttcctggcatccgtggttgacccgcgggtggca
tcatccgcagctaaggccgcactagaggagttttcccgagtgcaggaggaggcgacggat
aaggtctctgaaacatccaaccagcctgacaaaacagagtcgatggatgcagacaaaata
gaaacaaactccacctcccaccaggtcccttcaagggcagatgggctgaaggcagaaccc
agtggggccaaagtggagggagacctagtcaaaagagaaaacgcagaaaatatacttgca
gaggacagagacggaaggggggatgacgatgagagtttagggcggggagacgtggatgag
ggaagagtgatggagcaggatctggtggagggcagcgttgccacggcagcagcagctgct
cttgcttcagctgccacaaaagccaagcacttggcagcagtagaggagaggaagatcaag
tccctggtggctctgctggtggagacccagatgaagaagctagagatcaaactgaggcac
tttgaggagctggagaccataatggaccgtgagaaagaggctctggagcagcagcggcag
cagctcctgtccgagagacagacgttccacactgagcagctgaaacaggcagagatgaag
gttcgccagcagagggagcagcacagtcagccgggatacacaatgcagcaatcagccctg
cctcctccgtcaggtcaggccatgcccaaccggatgatgcctggtgggggaaacactcag
gtgatggcccctcgtcaccctggagctcccaatggcatgtacccgtcctcacaacctgat
gggatagcaccagctcagccaggtcctcctgcgtccagccacagctga
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