Plectropomus leopardus (leopard coralgrouper): 121957540
Help
Entry
121957540 CDS
T07454
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03013
Nucleocytoplasmic transport
plep03015
mRNA surveillance pathway
plep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121957540 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
121957540 (ddx39b)
03015 mRNA surveillance pathway
121957540 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plep03019
]
121957540 (ddx39b)
03041 Spliceosome [BR:
plep03041
]
121957540 (ddx39b)
Enzymes [BR:
plep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121957540 (ddx39b)
Messenger RNA biogenesis [BR:
plep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121957540 (ddx39b)
Spliceosome [BR:
plep03041
]
Complex C
Other components
EJC/TREX
121957540 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121957540 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121957540
NCBI-ProteinID:
XP_042362097
LinkDB
All DBs
Position
18:29878631..29895886
Genome browser
AA seq
434 aa
AA seq
DB search
MTENDVDNELLDYEEDEVEAAGVGDVGGAGDMLKRKEGVKGSYVSIHSSGFRDFLLKPEL
LRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSV
LVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEEVLKKDCPHIVVGTPGRI
LALTRSKTLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR
PVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDALEFNQVVIFVKS
VQRCVALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV
NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDESDARTLNDVQDRFEVNISELPD
EIDISSYSEFSFTL
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgacagagaatgatgtggacaacgagctgttggactatgaggaggacgaggtggaggct
gctggggtcggggatgttggaggtgcaggagacatgttgaagaggaaggagggagtgaag
ggctcctatgtgtccattcattcctctggattcagagacttcctgctcaaacctgaacta
ctccgagccatagtggattgtggctttgagcatccatctgaggttcagcatgaatgcatc
cctcaggccatccttggtatggatgtgctctgtcaggccaagtctgggatgggaaaaact
gcagtgtttgttctggccaccctgcagcagctggagcccgtaactggacaggtgtctgtc
ctggtgatgtgccataccagagagctggcctttcagatcagcaaggagtatgagagattt
tcaaagtacatgcccactgtcaaggtggcagtgttctttggagggctgtcgataaagaag
gatgaagaggtgctgaagaaggactgtcctcacatcgtggttggaactccgggcaggatc
ctggcgctgacacgcagcaagacactcaacctgcgtcacatcaaacacttcatcctggat
gagtgtgacaagatgctcgagcagcttgacatgcgcagagacgtccaggagattttccgc
atgactccccatgagaagcaggtcatgatgttcagcgccaccctaagcaaagagatccga
ccagtctgcagaaagttcatgcaagatccgatggaaatctttgtggatgacgagaccaag
ctgactctgcacgggctgcagcagtactacgtcaagctgaaggacaatgagaagaacagg
aagctgtttgacctcctggatgcactagagttcaatcaagtggtgatctttgtgaagtcg
gtccagcggtgcgtagctctggctcagctgctggtggagcagaacttcccagctatcgcc
atccatcgagggatgcctcaggaggagcgtttgtctcgctaccagcagttcaaggacttc
cagaggagaatcctggtggccaccaacctgtttggacgagggatggacatcgagagagtc
aacatcgcctttaattatgacatgccagaagactctgacacttacctacacagggttgcc
cgggcaggcaggtttggcacaaagggcctggctatcacgtttgtgtctgatgaaagcgat
gcccgcacactcaacgatgtccaggaccgcttcgaggtgaacatcagcgagctgccggat
gagatcgacatctcctcttacagtgagttctcattcactctgtga
DBGET
integrated database retrieval system
