Plectropomus leopardus (leopard coralgrouper): 121960111
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Entry
121960111 CDS
T07454
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121960111 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plep03041
]
121960111 (prpf4)
Spliceosome [BR:
plep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
121960111 (prpf4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_TEP1_2nd
PRP4
WD40_MABP1-WDR62_2nd
Beta-prop_EML
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_DCAF4
Ge1_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_WDR11_1st
WD40_like
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
121960111
NCBI-ProteinID:
XP_042365645
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Position
20:complement(25154361..25163808)
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AA seq
493 aa
AA seq
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MSDEEDLAPAVKKSRVFYGSLEEKERERLSAESARGSDAMKAGIEAGNINISSGETLDLE
ERVSERQQEALAAFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRERLRSV
LSVVGPDALKKSRRDEERAKRSQDECQQTWYHEGSASLKDARLWLAKYSLPRAMRRLEAA
RAQRDVAEATRAIRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWSGLCK
LWSVPDCNLIRTLRGLCVCVCVCVCVCVCVCVCVCVCLCVCRSDEPVADIEGHSERVSRV
SWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDLHFHPDGSLAATGGLDAFG
RVWDLRTGRCVVFLEGHLKEIYSVHFSPNGYHLATGSGDNTCKVWELRNRKCLYTVPAHQ
NLLSAVRFQPTEGHFLLTGAYDNTAKVWSHPGWTPLKTLAGHEGKVMGVDVSPDGKLIAT
SSYDRTFKLWLSE
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaggaggatctggctccggccgtgaagaagagtcgtgttttctacggaagc
ctggaggagaaggagcgcgagcgtcttagcgccgagtcggccagaggaagtgatgcgatg
aaggcaggcatcgaggcgggaaacatcaacatctcatcaggagagactctggacctggag
gagcgcgtcagcgagcgtcagcaggaggccctcgctgcttttgagcggcgccggcgagcg
cgacagatcaccgtttccaccgatgacgccgaggtgaaggcgggcctgcgggcgctggga
gagccaatcacactgttcggagagggaccagctgaccgccgggagaggctgcgcagcgtt
ctgtccgtggtcggtccggacgctctgaagaagtccaggagagacgaagagagagcaaag
aggtcacaggacgagtgccagcagacgtggtaccatgaaggctccgcctccctgaaggat
gctcgcctttggttggccaaatactctctaccccgggcgatgaggcgtctggaagctgca
cgtgctcagagggacgttgccgaggcaaccagggcaattcggcaacaagagctgcacaaa
agcctgaggaatctcaacaacttctgcagtcagattggagatgatcgaccaatcagcttc
tgtcacttcagccccgactccaaaatgttggccacagcgtcctggagcggtctttgtaag
ctgtggtccgtccctgactgcaacctgattcgtacactcagaggcctgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtt
tgccgtagcgacgagccagtggcagacattgagggtcacagtgagcgagtgtctcgggtg
tcgtggcatccctcagggaggttcctgggaacaacctgttatgataactcgtggcgtctc
tgggatctggaggttcaggaggaaatcctccatcaggagggtcacagcaaaggagtccac
gaccttcacttccaccccgacggctctctggctgctactggaggactggatgcgtttggc
agggtgtgggaccttcggacgggacgctgcgttgtcttcctggagggacacctgaaggag
atctacagtgtgcacttctctcccaacgggtatcacctggcaacaggaagtggtgataac
acctgtaaggtttgggagctgaggaacagaaagtgtctgtacacagtccccgcccaccag
aacctgctgtctgcggtccgcttccaacccacagaaggtcacttcctgttgaccggagcg
tatgacaacacggcgaaggtctggagtcacccgggctggaccccgctgaagacgctggcg
ggacacgaggggaaggtgatgggcgtcgacgtgtcgcctgacgggaagctgatcgccacc
agctcctacgaccgaaccttcaaactgtggctgtcagagtga
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