Plectropomus leopardus (leopard coralgrouper): 121960927
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Entry
121960927 CDS
T07454
Symbol
topbp1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121960927 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plep03032
]
121960927 (topbp1)
03400 DNA repair and recombination proteins [BR:
plep03400
]
121960927 (topbp1)
DNA replication proteins [BR:
plep03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
121960927 (topbp1)
DNA repair and recombination proteins [BR:
plep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
121960927 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
121960927
NCBI-ProteinID:
XP_042366764
LinkDB
All DBs
Position
21:6064971..6085116
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AA seq
1521 aa
AA seq
DB search
MSKGDKGFIVKFVESEGQRNEYAVKAYEAILELQSDKYLKTIDEDAVLQMDQKDKSLFVF
SSFTTSAFLHCKKLGCRVVSPLVVLYCLQQQHCVPKAENPVYNMAMADITISCTSLDKAT
RTEVMDLVQLMGGRVCLDLNISVTHLIAGEVGSKKYLVAASLGKPILLPSWVKACWEKSQ
DSLFRYTDLPMEDYLCPVLRGCTVCVTGLSSTERKEVQRLCDQHGANYTGQLKMNECTHL
IVSEPSGQKYECAKKWNVYCVSLHWLFDSIEKGFCQDESRYTVERNASKKTQPQTSTPTG
TNKKGEGPSLLGLSHISVNASMTINDTAVTNGSISRLEAPDPIDTLDLTVCPADDILDSC
KLYLCGLPGKKLEKLRRLVNAAGGLRFNQPHEDLTHVVMGELDQDLKNFISKATHRPHVV
TVQWLLDSFNKGTLLPEEGYLHPDCLPPAPAALSVPARHTSTSRTSAGPPVASPSTPRQT
RAEEDLLSQYMDDDPTVVDMPPXAEGLSRKSISTLAEPHRESWTPNHTRGPETDSTLQEA
SQAGLFFGKRFLLLGFGAEXETQLSLLVTENGGRVLMGRTRVVADFAVVPLLGCLVEATV
DEVVTDTWLAMCVEKECVLQLSSNPLFTPVPVLDGRFPLKDCVLSVSQFTGAERESLVEM
AKHLGASMVTXHVQDYFVRLANQKKGMLASTHLVLQSPEGTKYQAAKKWGLPAVTVRWIL
ESARTGQRAEEGRFLVDLPPSPEREDESFVGGSQRTAMPPPAHVSPEGPFTGPRAVKAVT
PLDLGRFQSKVFRSVLDEMKPKEDIGTPKQNQEGGRMNPLQREASLKLDTPSRFLSRDQL
FRPSFNVKDPLGELETPGGRSKPGERVETPLTDVINRNLKVALANSTRNNASDMQAISAS
PQFTKTATKEVPEKDAGPLAGVVICVGKKLSKMQSELNAIAASLGADFRWACDDTVTHYI
YQGRVGDNTREYRGVKERGLHLVSQHWLQACADEQRHVPESLYPFTYNPKMSLNLSQVPN
SSQRSPPFTRTQLKDIAEAKDDKSELTATEEATTLRRVSDGSGDQEQMNDTADKSDISET
LEMRENLQRQLQEIMSATKLTTGRRTSVRLSRLGSAGADSGPHTPEGSRVGRCGSRRTLE
ALRVSREAAMDINTEPSQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSEPFVPPPPPT
TDENGPQFRDSMTDSELVEMAACEVIDQHMGQRLTTKKRESDILTPEAPSIAFPLANPAV
APEPQEEREEVKQPPRFQLSSLSPQERIDYSHLIEELGGVVLDKQSFDPSCSHIIVGTPL
RNEKYLAAMAAGKWILHRSYLEACRSVGRFIPEEEYEWGSSSILDALPSITSQQKRLALA
AMRWRKALQGRSEEGGAFSGWTVMLNIDQNRESGFRRLLQSGRAKVLPSPSPSLYKEATH
LFADFSRLKPGDFRVDISEATSHGVTCLKPEYIADYLMQEPTPPIELYHLTEAPSEETPD
TPSRKRKAAADNSRLKKTRLA
NT seq
4566 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaggagacaagggcttcattgtcaagtttgtggaaagtgaaggacaaagaaat
gagtatgccgtcaaggcgtatgaggctattctggagctccagtctgacaaatacttaaaa
accatcgatgaagatgctgttttacagatggaccagaaggacaagtctctgtttgtcttc
agcagcttcaccacttcagcatttctgcactgcaaaaagcttggctgccgggtggtgagt
ccactggtggtgttgtactgtctgcagcagcagcactgtgtccctaaagcagagaatccc
gtctataacatggccatggctgacatcactatttcctgcaccagtctggataaagcaaca
cggacagaggtgatggatctggtgcagctcatgggtggacgggtctgtcttgacctaaat
atatctgtcacacacctgatagcaggagaggtgggcagcaagaaatatctggtagctgcc
agtctgggtaaacccatcctgctgccttcatgggtcaaagcctgctgggagaaatctcag
gacagtcttttcaggtataccgatctgcccatggaggactatctgtgcccggtgctgcgc
ggctgcaccgtttgtgtgacaggcctctcaagcacggagcgcaaagaggtgcagcggctc
tgtgatcagcacggagccaactacaccggtcagctgaaaatgaacgagtgtacacacctc
atcgtcagtgagccctcaggtcagaagtacgagtgtgcaaagaagtggaacgtgtattgc
gtgtctctgcactggctgtttgacagcatagaaaagggcttttgtcaggacgagagcagg
tacactgtggagcgcaacgcatcaaagaagacgcagccgcagacttccacccccactggc
accaacaagaagggagagggtccttctctgttgggcttgagccacatttcagtcaatgca
agcatgaccataaatgacacagcggtcaccaacggcagcatcagccgcctagaagctcca
gaccccatcgacactctggatctcaccgtgtgcccagcggatgatatactggatagctgt
aagctgtatttgtgcggcctgccggggaagaaactggagaagctgcggcgtcttgtgaac
gctgcaggaggtctgcgcttcaaccagccgcatgaggatctcacacatgtggtcatggga
gagctggaccaggacctcaaaaattttatctccaaagcaacacacagacctcatgtggta
acagtgcagtggctgctggacagttttaacaaaggcactttgcttccagaggaaggttac
ctccaccccgactgcctgcctccggctccagctgctctatctgtgccggcccgtcacact
tccacctcccgaacctccgctggtcctcctgtggccagtcccagcacgcccaggcaaacc
agagcagaggaagatctgctctcacagtacatggatgatgaccctacagtagttgacatg
cccccancggcagagggactcagcaggaagtccatcagtacacttgcagagcctcaccgc
gaatcctggacgccaaaccacaccagaggaccagagacagactcaactctgcaggaagcc
agccaggcaggcctgttttttggaaagcgtttcctccttttgggttttggcgctgaangt
gagacccagctgtctctactggtgacagaaaacggaggcagggtgctgatgggtcgtaca
cgtgttgtggcggactttgcagtcgtcccgctgttgggctgtttggtggaggccacagtg
gacgaggtggtcactgatacctggctggccatgtgtgtggagaaggagtgtgtcctgcag
ctgtcctccaaccctttgttcacccctgtccctgtgctggacggacgttttcctctcaaa
gattgcgttctgtctgtgagtcagttcaccggcgcagagagggagtctttggtggagatg
gccaaacacctcggagcaagtatggttacataacacgtccaggattactttgtgcgcctc
gccaaccagaagaaagggatgctggccagcactcatctggtgctgcagagccccgaaggc
acaaagtaccaggcagcaaagaaatgggggcttccagccgtcactgtgcgctggatacta
gagtctgctcgcactggccagagggcagaggaggggcgctttttagttgacctgccaccc
tcaccagagagagaagatgagagttttgtcggtggttcccagaggacagccatgcctcca
ccagcacatgtgtctccggagggtccctttactgggcccagagcggtaaaggccgtcacc
cctctggatttaggccgcttccagagcaaagtgttccgctccgtgttggacgagatgaaa
cccaaagaggacatcggcacgcccaaacaaaaccaggagggcggcagaatgaacccgctg
cagagggaagcgtccctgaagctggacactccctctcgtttcctcagcagagatcagctg
ttcaggccctcctttaacgttaaggatccactgggagaactggagactccagggggaaga
tccaaaccaggagagagggtggagacgccgctgactgatgtcatcaacaggaacctgaag
gtggctctggccaatagcacccgaaataatgcctcagatatgcaagccatctctgccagc
ccccaatttactaagacagctacgaaggaggtcccagaaaaagacgccggccctcttgct
ggtgtcgtgatctgtgtgggaaagaagctgagtaaaatgcagagcgaactcaacgccatt
gctgcctcgcttggagctgacttcaggtgggcttgtgatgacaccgtgacacactacatc
taccagggccgtgttggagacaacacccgggaatacagaggagtgaaggagagagggctg
catctggtgtcccagcactggctgcaggcttgtgctgacgagcagaggcacgtcccggag
tctctgtatccgttcacctacaaccccaagatgagcctgaacctcagtcaggtgcccaac
agttcccagaggtctccaccttttacacgaacccaactaaaagacattgctgaggcaaaa
gacgacaagagtgaactcactgccacagaagaagccacaacgttacgtcgtgtaagcgac
ggaagcggagatcaagaacagatgaatgatactgcagataaaagtgatatttcagagact
ctagaaatgagagagaacctgcagagacagctccaggagatcatgtcggccacgaagctg
acgacagggaggcgcacctcagtcagactcagcaggttgggatcagcaggggccgactcg
ggcccccatacacctgaggggagtcgggttggacgctgcgggagcagacgtaccctggaa
gctctgagggtttccagagaggcagctatggacataaacacagagccgtctcagagcgag
cagatcgtttgggacgacccgacagccagggaggagagagccaagctggctgataacttg
cagtggccggggagtccctcacaacactctgagcccttcgtacctccgcctcctcccact
actgatgagaacggtccccagttcagggactccatgacggactctgagctggtggagatg
gctgcctgtgaagtcattgaccagcatatgggtcagagactcacaacaaagaagcgagaa
agtgacatcctcactcctgaagccccgagcatcgccttccctctcgccaaccccgcagtc
gcaccggagccacaggaggagcgtgaggaagtaaagcagccgcccagatttcagctgtcc
tccctcagccctcaggagcgcattgattacagccacctcatcgaggagctcggcggggtc
gtcctggataagcagtctttcgaccccagttgttcccacatcatcgtagggactccactg
cgcaacgagaagtacctggcagcgatggcggcgggcaaatggatcctgcaccgctcgtac
ctggaggcctgccgctctgttggtcgcttcatcccggaggaagagtatgagtggggcagt
agctccatcctggacgcgttgccctccatcacctcacagcagaagaggctggctttggct
gccatgcgctggagaaaagcgctgcagggacgctctgaggaagggggagccttcagtggg
tggacagtgatgctgaacatcgaccagaacagagaatcaggcttcaggcgcttactgcag
tctggcagggcaaaggtcctgccgagtccctccccatccctgtacaaggaggccactcac
ctgtttgcagacttcagtcggctgaaacccggagacttcagagtcgacatatcagaggct
acctcccacggagtcacatgcctgaaaccagagtacatcgcagactacctcatgcaggag
ccgaccccacccatcgagctgtaccacctgactgaagccccctctgaagaaactccagac
actccgtcacgtaagcgcaaagcagccgcagacaactccaggctgaaaaagacacgtctg
gcctga
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integrated database retrieval system
