Plectropomus leopardus (leopard coralgrouper): 121961494
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Entry
121961494 CDS
T07454
Symbol
lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03018
RNA degradation
plep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121961494 (lsm8)
09123 Folding, sorting and degradation
03018 RNA degradation
121961494 (lsm8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plep03019
]
121961494 (lsm8)
03041 Spliceosome [BR:
plep03041
]
121961494 (lsm8)
Messenger RNA biogenesis [BR:
plep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121961494 (lsm8)
mRNA degradation factors
5'-3' decay
Lsm complex
121961494 (lsm8)
Spliceosome [BR:
plep03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
121961494 (lsm8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
RimP_C
Motif
Other DBs
NCBI-GeneID:
121961494
NCBI-ProteinID:
XP_042367434
LinkDB
All DBs
Position
22:complement(2731856..2734811)
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AA seq
82 aa
AA seq
DB search
MSTALESYINRTVAIITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGRSTRKQTPLWI
NT seq
249 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgccctggagagctacattaaccgcaccgtggccatcatcacctcagacggc
aggatgatcgtgggcaccctgaagggcttcgatcagaccatcaacctgatcctggacgag
agtcacgagcgagtgttcagctccagtcagggcgtggagcaggtggtgctgggactttac
atcgtcagaggagacaacgtggcggtgatcgggagatcgacgaggaaacagactccactc
tggatttag
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